RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MINPP1Q9UNW1 487 aa17.43■□□□□ 0.38
VIPAS39-208ENST00000556412 GPSM2P81274 684 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 CHRNDQ07001 517 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 G3BP1Q13283 466 aaKnown RBP eCLIP17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 METTL24Q5JXM2 366 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 DPP8Q6V1X1 898 aaPredicted RBP17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 APBB1O00213 710 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 ARHGAP27Q6ZUM4 889 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 MPNDQ8N594 471 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 EXOC6BQ9Y2D4 811 aa17.42■□□□□ 0.38
VIPAS39-208ENST00000556412 DCAF8L1A6NGE4 600 aa17.41■□□□□ 0.38
VIPAS39-208ENST00000556412 TAF5LO75529 589 aa17.41■□□□□ 0.38
VIPAS39-208ENST00000556412 CC2D2BQ6DHV5 1058 aa17.41■□□□□ 0.38
VIPAS39-208ENST00000556412 BCL11AQ9H165 835 aa17.41■□□□□ 0.38
VIPAS39-208ENST00000556412 KCNJ4P48050 445 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 RTKN2Q8IZC4 609 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 ANKRD2Q9GZV1 360 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 RIPOR2Q9Y4F9 1068 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 DLEC1Q9Y238 1755 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 MROH5Q6ZUA9 1318 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 C6orf229H3BNL8 230 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 CIAO1O76071 339 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 IL15P40933 162 aaPredicted RBP17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 ATG9AQ7Z3C6 839 aa17.4■□□□□ 0.38
VIPAS39-208ENST00000556412 XDHP47989 1333 aa17.39■□□□□ 0.37
VIPAS39-208ENST00000556412 UFL1O94874 794 aa17.39■□□□□ 0.37
VIPAS39-208ENST00000556412 GGA1Q9UJY5 639 aa17.39■□□□□ 0.37
VIPAS39-208ENST00000556412 FBXO3Q9UK99 471 aa17.39■□□□□ 0.37
VIPAS39-208ENST00000556412 MYH3P11055 1940 aa17.38■□□□□ 0.37
VIPAS39-208ENST00000556412 RASSF7Q02833 373 aa17.38■□□□□ 0.37
VIPAS39-208ENST00000556412 TAOK3Q9H2K8 898 aa17.38■□□□□ 0.37
VIPAS39-208ENST00000556412 CEP126Q9P2H0 1117 aa17.38■□□□□ 0.37
VIPAS39-208ENST00000556412 SLX4Q8IY92 1834 aa17.38■□□□□ 0.37
VIPAS39-208ENST00000556412 SNAP23O00161 211 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 GRIN3BO60391 1043 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 GPR101Q96P66 508 aaPredicted RBP17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 RWDD1Q9H446 243 aaPredicted RBP17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 NOP58Q9Y2X3 529 aaKnown RBP17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 WTIPA6NIX2 430 aaPredicted RBP17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 NFKBIEO00221 500 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 FKBP4Q02790 459 aaKnown RBP eCLIP17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 TFCP2Q12800 502 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 GRIPAP1Q4V328 841 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 HSP90AB4PQ58FF6 505 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 TBC1D16Q8TBP0 767 aa17.37■□□□□ 0.37
VIPAS39-208ENST00000556412 ATP2B4P23634 1241 aa17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 HDAC1Q13547 482 aaPredicted RBP17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 ZNF277Q9NRM2 450 aaPredicted RBP17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 PODXL2Q9NZ53 605 aa17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 POLLQ9UGP5 575 aa17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 TAF1P21675 1872 aa17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 ZNF804BA4D1E1 1349 aa17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 GOLGB1Q14789 3259 aaKnown RBP17.36■□□□□ 0.37
VIPAS39-208ENST00000556412 PDE8BO95263 885 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 SUPT20HQ8NEM7 779 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 RIMBP2O15034 1052 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 SASH1O94885 1247 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 IGHDP01880 384 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 ERC1Q8IUD2 1116 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 LEMD3Q9Y2U8 911 aa17.35■□□□□ 0.37
VIPAS39-208ENST00000556412 PUM3Q15397 648 aaKnown RBP17.34■□□□□ 0.37
VIPAS39-208ENST00000556412 VGLL2Q8N8G2 317 aa17.34■□□□□ 0.37
VIPAS39-208ENST00000556412 PSMD1Q99460 953 aa17.34■□□□□ 0.37
VIPAS39-208ENST00000556412 EYA3Q99504 573 aa17.34■□□□□ 0.37
VIPAS39-208ENST00000556412 DCTPP1Q9H773 170 aa17.34■□□□□ 0.37
VIPAS39-208ENST00000556412 IL1RAPL2Q9NP60 686 aa17.34■□□□□ 0.37
VIPAS39-208ENST00000556412 SNED1Q8TER0 1413 aa17.33■□□□□ 0.37
VIPAS39-208ENST00000556412 PPIP5K2O43314 1243 aa17.33■□□□□ 0.37
VIPAS39-208ENST00000556412 ATP2B3Q16720 1220 aa17.33■□□□□ 0.37
VIPAS39-208ENST00000556412 WASHC4Q2M389 1173 aa17.33■□□□□ 0.37
VIPAS39-208ENST00000556412 RTFDC1Q9BY42 306 aaPredicted RBP17.33■□□□□ 0.37
VIPAS39-208ENST00000556412 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.33■□□□□ 0.37
VIPAS39-208ENST00000556412 BRCA1P38398 1863 aaKnown RBP17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 CACNA1SQ13698 1873 aa17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 RAB11FIP3O75154 756 aa17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 KLRK1P26718 216 aa17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 AOC3Q16853 763 aa17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 RHPN1Q8TCX5 695 aa17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 KIF1BPQ96EK5 621 aa17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 ZC3H12CQ9C0D7 883 aaKnown RBP17.33■□□□□ 0.36
VIPAS39-208ENST00000556412 UBE4AQ14139 1066 aa17.32■□□□□ 0.36
VIPAS39-208ENST00000556412 LARGE2Q8N3Y3 721 aa17.32■□□□□ 0.36
VIPAS39-208ENST00000556412 NEUROD6Q96NK8 337 aa17.32■□□□□ 0.36
VIPAS39-208ENST00000556412 AKAP2Q9Y2D5 859 aa17.32■□□□□ 0.36
VIPAS39-208ENST00000556412 SPEF2Q9C093 1822 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 G3V3G9 751 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 IFIT1P09914 478 aaKnown RBP17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 SLC5A1P13866 664 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 IARSP41252 1262 aaKnown RBP17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 DCAF8Q5TAQ9 597 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 B4GALNT3Q6L9W6 998 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 LPIN2Q92539 896 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 CCDC136Q96JN2 1154 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 LRRCC1Q9C099 1032 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 ZBTB47Q9UFB7 747 aaPredicted RBP17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 LTBP3Q9NS15 1303 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 A0A1B0GUL7 405 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 SMARCA5O60264 1052 aaPredicted RBP17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 TIMM10P62072 90 aa17.31■□□□□ 0.36
VIPAS39-208ENST00000556412 GCC1Q96CN9 775 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms