RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GGA1Q9UJY5 639 aa20.38■□□□□ 0.85
CCDC88C-209ENST00000554872 GRM8O00222 908 aa20.37■□□□□ 0.85
CCDC88C-209ENST00000554872 CCDC85AQ96PX6 553 aaPredicted RBP20.37■□□□□ 0.85
CCDC88C-209ENST00000554872 UTYO14607 1347 aa20.36■□□□□ 0.85
CCDC88C-209ENST00000554872 UFL1O94874 794 aa20.36■□□□□ 0.85
CCDC88C-209ENST00000554872 ATP2B4P23634 1241 aa20.36■□□□□ 0.85
CCDC88C-209ENST00000554872 ADARB2Q9NS39 739 aaKnown RBP20.36■□□□□ 0.85
CCDC88C-209ENST00000554872 ANKIB1Q9P2G1 1089 aa20.36■□□□□ 0.85
CCDC88C-209ENST00000554872 ITGBL1O95965 494 aaPredicted RBP20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 ITGA6P23229 1130 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 EPS15P42566 896 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 FOXO4P98177 505 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 FAM161AQ3B820 660 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 SSH1Q8WYL5 1049 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 DPF2Q92785 391 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 KLRG1Q96E93 195 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 CDCA7LQ96GN5 454 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 ZC3H12CQ9C0D7 883 aaKnown RBP20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 SRCIN1Q9C0H9 1055 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 MINPP1Q9UNW1 487 aa20.35■□□□□ 0.85
CCDC88C-209ENST00000554872 MED23Q9ULK4 1368 aa20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 ECE2O60344 883 aa20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 RPS12P25398 132 aaKnown RBP20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 IGHMBP2P38935 993 aaKnown RBP20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 GMPSP49915 693 aaPredicted RBP20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 BRPF1P55201 1214 aaPredicted RBP20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 EAPPQ56P03 285 aaPredicted RBP20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 CREBZFQ9NS37 354 aa20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 PSME4Q14997 1843 aa20.34■□□□□ 0.85
CCDC88C-209ENST00000554872 SPEF2Q9C093 1822 aa20.33■□□□□ 0.85
CCDC88C-209ENST00000554872 RAD17O75943 681 aa20.33■□□□□ 0.85
CCDC88C-209ENST00000554872 DIEXFQ68CQ4 756 aaKnown RBP20.33■□□□□ 0.85
CCDC88C-209ENST00000554872 DBNDD1Q9H9R9 158 aa20.33■□□□□ 0.85
CCDC88C-209ENST00000554872 JMYQ8N9B5 988 aa20.32■□□□□ 0.84
CCDC88C-209ENST00000554872 PGAP2Q9UHJ9 254 aa20.32■□□□□ 0.84
CCDC88C-209ENST00000554872 LEMD3Q9Y2U8 911 aa20.32■□□□□ 0.84
CCDC88C-209ENST00000554872 ANKRD18BA2A2Z9 1011 aa20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 RIMBP2O15034 1052 aa20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 CNTROBQ8N137 903 aa20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 ZC3H15Q8WU90 426 aaKnown RBP20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 ANKRD2Q9GZV1 360 aa20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 C9orf78Q9NZ63 289 aaPredicted RBP20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 SCN9AQ15858 1988 aa20.31■□□□□ 0.84
CCDC88C-209ENST00000554872 PSMD14O00487 310 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 VIL1P09327 827 aaKnown RBP20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 CCT4P50991 539 aaKnown RBP20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 HTRA3P83110 453 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 SLC4A10Q6U841 1118 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 PODNQ7Z5L7 613 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 MPHOSPH8Q99549 860 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 BCL2L13Q9BXK5 485 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 CLEC11AQ9Y240 323 aa20.3■□□□□ 0.84
CCDC88C-209ENST00000554872 IFIT5Q13325 482 aaKnown RBP20.29■□□□□ 0.84
CCDC88C-209ENST00000554872 DOK7Q18PE1 504 aa20.29■□□□□ 0.84
CCDC88C-209ENST00000554872 GPR101Q96P66 508 aaPredicted RBP20.29■□□□□ 0.84
CCDC88C-209ENST00000554872 A0A1B0GUL6 1792 aa20.29■□□□□ 0.84
CCDC88C-209ENST00000554872 EPHA10Q5JZY3 1008 aa20.28■□□□□ 0.84
CCDC88C-209ENST00000554872 MAP1SQ66K74 1059 aaPredicted RBP20.28■□□□□ 0.84
CCDC88C-209ENST00000554872 MIER1Q8N108 512 aa20.28■□□□□ 0.84
CCDC88C-209ENST00000554872 CNOT7Q9UIV1 285 aaKnown RBP20.28■□□□□ 0.84
CCDC88C-209ENST00000554872 H7C1D1 291 aa20.27■□□□□ 0.84
CCDC88C-209ENST00000554872 RABL6Q3YEC7 729 aaPredicted RBP20.27■□□□□ 0.84
CCDC88C-209ENST00000554872 LMBR1LQ6UX01 489 aa20.27■□□□□ 0.84
CCDC88C-209ENST00000554872 KAZALD1Q96I82 304 aa20.27■□□□□ 0.84
CCDC88C-209ENST00000554872 SMC4Q9NTJ3 1288 aa20.27■□□□□ 0.84
CCDC88C-209ENST00000554872 ZNF646O15015 1829 aaPredicted RBP20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 TMEM88BA6NKF7 163 aa20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 C15orf52Q6ZUT6 534 aaKnown RBP20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 MICALL2Q8IY33 904 aa20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 AGBL3Q8NEM8 1001 aa20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 COA1Q9GZY4 146 aa20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 ZNF804BA4D1E1 1349 aa20.26■□□□□ 0.83
CCDC88C-209ENST00000554872 G3V3G9 751 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 NBPF7P0C2Y1 421 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 CHRNDQ07001 517 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 CCDC57Q2TAC2 916 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 DCAF8Q5TAQ9 597 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 SUCLG2Q96I99 432 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 KCNQ5Q9NR82 932 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 ZBTB12Q9Y330 459 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 IRS2Q9Y4H2 1338 aa20.25■□□□□ 0.83
CCDC88C-209ENST00000554872 CNTNAP1P78357 1384 aa20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 HIRAP54198 1017 aaPredicted RBP20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 ZNF280AP59817 542 aaPredicted RBP20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 RSBN1LQ6PCB5 846 aaPredicted RBP20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 TRPM4Q8TD43 1214 aa20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 GMLQ99445 158 aa20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 PCNTO95613 3336 aa20.24■□□□□ 0.83
CCDC88C-209ENST00000554872 USP17L3A6NCW0 530 aa20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 USP17L4A6NCW7 530 aa20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 WTIPA6NIX2 430 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 MMP14P50281 582 aa20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 RARSP54136 660 aaKnown RBP20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 USP17L1Q7RTZ2 530 aa20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 USP44Q9H0E7 712 aa20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 KIF16BQ96L93 1317 aa20.23■□□□□ 0.83
CCDC88C-209ENST00000554872 TRPM7Q96QT4 1865 aa20.22■□□□□ 0.83
CCDC88C-209ENST00000554872 ARHGAP45Q92619 1136 aa20.22■□□□□ 0.83
CCDC88C-209ENST00000554872 API5Q9BZZ5 524 aaKnown RBP20.22■□□□□ 0.83
CCDC88C-209ENST00000554872 MYO3BQ8WXR4 1341 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms