RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MINPP1Q9UNW1 487 aa26.34■■□□□ 1.81
VPS29-206ENST00000549578 EYA2O00167 538 aa26.33■■□□□ 1.81
VPS29-206ENST00000549578 TMX4Q9H1E5 349 aaPredicted RBP26.32■■□□□ 1.8
VPS29-206ENST00000549578 RIPOR2Q9Y4F9 1068 aa26.32■■□□□ 1.8
VPS29-206ENST00000549578 SURF6O75683 361 aaKnown RBP26.31■■□□□ 1.8
VPS29-206ENST00000549578 ATG9AQ7Z3C6 839 aa26.31■■□□□ 1.8
VPS29-206ENST00000549578 GPSM2P81274 684 aa26.3■■□□□ 1.8
VPS29-206ENST00000549578 CHRNDQ07001 517 aa26.3■■□□□ 1.8
VPS29-206ENST00000549578 GPR162Q16538 588 aa26.3■■□□□ 1.8
VPS29-206ENST00000549578 CCDC93Q567U6 631 aa26.3■■□□□ 1.8
VPS29-206ENST00000549578 HELBQ8NG08 1087 aaPredicted RBP26.3■■□□□ 1.8
VPS29-206ENST00000549578 CIAO1O76071 339 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 SNED1Q8TER0 1413 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 FBXO3Q9UK99 471 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 NSFL1CQ9UNZ2 370 aaKnown RBP26.29■■□□□ 1.8
VPS29-206ENST00000549578 EXOC6BQ9Y2D4 811 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 A0A1B0GUL6 1792 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 SOGA3Q5TF21 947 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 CC2D2BQ6DHV5 1058 aa26.29■■□□□ 1.8
VPS29-206ENST00000549578 NOP58Q9Y2X3 529 aaKnown RBP26.29■■□□□ 1.8
VPS29-206ENST00000549578 UTRNP46939 3433 aa26.28■■□□□ 1.8
VPS29-206ENST00000549578 IL15P40933 162 aaPredicted RBP26.28■■□□□ 1.8
VPS29-206ENST00000549578 G3BP1Q13283 466 aaKnown RBP eCLIP26.28■■□□□ 1.8
VPS29-206ENST00000549578 METTL24Q5JXM2 366 aa26.28■■□□□ 1.8
VPS29-206ENST00000549578 ANKIB1Q9P2G1 1089 aa26.28■■□□□ 1.8
VPS29-206ENST00000549578 MROH5Q6ZUA9 1318 aa26.28■■□□□ 1.8
VPS29-206ENST00000549578 LTBP1Q14766 1721 aa26.27■■□□□ 1.8
VPS29-206ENST00000549578 TAF5LO75529 589 aa26.27■■□□□ 1.8
VPS29-206ENST00000549578 OS9Q13438 667 aaPredicted RBP26.27■■□□□ 1.8
VPS29-206ENST00000549578 MPNDQ8N594 471 aa26.27■■□□□ 1.8
VPS29-206ENST00000549578 HDAC1Q13547 482 aaPredicted RBP26.26■■□□□ 1.79
VPS29-206ENST00000549578 DPP8Q6V1X1 898 aaPredicted RBP26.26■■□□□ 1.79
VPS29-206ENST00000549578 RTKN2Q8IZC4 609 aa26.26■■□□□ 1.79
VPS29-206ENST00000549578 ANKRD2Q9GZV1 360 aa26.26■■□□□ 1.79
VPS29-206ENST00000549578 XDHP47989 1333 aa26.26■■□□□ 1.79
VPS29-206ENST00000549578 DUOX1Q9NRD9 1551 aa26.25■■□□□ 1.79
VPS29-206ENST00000549578 WTIPA6NIX2 430 aaPredicted RBP26.25■■□□□ 1.79
VPS29-206ENST00000549578 FER1L6Q2WGJ9 1857 aa26.25■■□□□ 1.79
VPS29-206ENST00000549578 SNAP23O00161 211 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 ARHGAP27Q6ZUM4 889 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 VGLL2Q8N8G2 317 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 PODXL2Q9NZ53 605 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 APBB1O00213 710 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 NFKBIEO00221 500 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 SASH1O94885 1247 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 IGHDP01880 384 aa26.24■■□□□ 1.79
VPS29-206ENST00000549578 UFL1O94874 794 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 TFCP2Q12800 502 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 GRIPAP1Q4V328 841 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 TBC1D16Q8TBP0 767 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 RWDD1Q9H446 243 aaPredicted RBP26.23■■□□□ 1.79
VPS29-206ENST00000549578 DCTPP1Q9H773 170 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 CEP126Q9P2H0 1117 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 POLLQ9UGP5 575 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 GGA1Q9UJY5 639 aa26.23■■□□□ 1.79
VPS29-206ENST00000549578 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.23■■□□□ 1.79
VPS29-206ENST00000549578 PDE8BO95263 885 aa26.22■■□□□ 1.79
VPS29-206ENST00000549578 RASSF7Q02833 373 aa26.22■■□□□ 1.79
VPS29-206ENST00000549578 GPR101Q96P66 508 aaPredicted RBP26.22■■□□□ 1.79
VPS29-206ENST00000549578 C6orf229H3BNL8 230 aa26.21■■□□□ 1.79
VPS29-206ENST00000549578 FKBP4Q02790 459 aaKnown RBP eCLIP26.21■■□□□ 1.79
VPS29-206ENST00000549578 HSP90AB4PQ58FF6 505 aa26.21■■□□□ 1.79
VPS29-206ENST00000549578 TAOK3Q9H2K8 898 aa26.21■■□□□ 1.79
VPS29-206ENST00000549578 ATP2B4P23634 1241 aa26.2■■□□□ 1.79
VPS29-206ENST00000549578 KCNJ4P48050 445 aa26.2■■□□□ 1.79
VPS29-206ENST00000549578 PSMD1Q99460 953 aa26.2■■□□□ 1.79
VPS29-206ENST00000549578 RTFDC1Q9BY42 306 aaPredicted RBP26.2■■□□□ 1.79
VPS29-206ENST00000549578 ZNF804BA4D1E1 1349 aa26.2■■□□□ 1.78
VPS29-206ENST00000549578 GRIN3BO60391 1043 aa26.19■■□□□ 1.78
VPS29-206ENST00000549578 LEMD3Q9Y2U8 911 aa26.19■■□□□ 1.78
VPS29-206ENST00000549578 ERC1Q8IUD2 1116 aa26.19■■□□□ 1.78
VPS29-206ENST00000549578 ZNF277Q9NRM2 450 aaPredicted RBP26.19■■□□□ 1.78
VPS29-206ENST00000549578 RAB11FIP3O75154 756 aa26.18■■□□□ 1.78
VPS29-206ENST00000549578 PUM3Q15397 648 aaKnown RBP26.18■■□□□ 1.78
VPS29-206ENST00000549578 RHPN1Q8TCX5 695 aa26.18■■□□□ 1.78
VPS29-206ENST00000549578 LTBP3Q9NS15 1303 aa26.17■■□□□ 1.78
VPS29-206ENST00000549578 KLRK1P26718 216 aa26.17■■□□□ 1.78
VPS29-206ENST00000549578 ERICH6BQ5W0A0 696 aa26.17■■□□□ 1.78
VPS29-206ENST00000549578 SUPT20HQ8NEM7 779 aa26.17■■□□□ 1.78
VPS29-206ENST00000549578 FGFR2P21802 821 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 PRELPP51888 382 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 UBE4AQ14139 1066 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 ATP2B3Q16720 1220 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 KIF1BPQ96EK5 621 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 BCL11AQ9H165 835 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 IL1RAPL2Q9NP60 686 aa26.16■■□□□ 1.78
VPS29-206ENST00000549578 RIMBP2O15034 1052 aa26.15■■□□□ 1.78
VPS29-206ENST00000549578 DCAF8L1A6NGE4 600 aa26.14■■□□□ 1.78
VPS29-206ENST00000549578 AOC3Q16853 763 aa26.14■■□□□ 1.78
VPS29-206ENST00000549578 WASHC4Q2M389 1173 aa26.14■■□□□ 1.78
VPS29-206ENST00000549578 TXNRD3Q86VQ6 643 aa26.14■■□□□ 1.78
VPS29-206ENST00000549578 GCC1Q96CN9 775 aa26.14■■□□□ 1.78
VPS29-206ENST00000549578 EYA3Q99504 573 aa26.14■■□□□ 1.78
VPS29-206ENST00000549578 ZNF609O15014 1411 aa26.14■■□□□ 1.77
VPS29-206ENST00000549578 SMARCA5O60264 1052 aaPredicted RBP26.14■■□□□ 1.77
VPS29-206ENST00000549578 TIMM10P62072 90 aa26.14■■□□□ 1.77
VPS29-206ENST00000549578 TNNI3KQ59H18 835 aa26.14■■□□□ 1.77
VPS29-206ENST00000549578 LPIN2Q92539 896 aa26.14■■□□□ 1.77
VPS29-206ENST00000549578 LRRCC1Q9C099 1032 aa26.14■■□□□ 1.77
VPS29-206ENST00000549578 AKAP2Q9Y2D5 859 aa26.14■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms