RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CNNM1Q9NRU3 951 aa21.77■■□□□ 1.08
CLSTN3-210ENST00000540931 MROH5Q6ZUA9 1318 aa21.77■■□□□ 1.07
CLSTN3-210ENST00000540931 LTBP3Q9NS15 1303 aa21.77■■□□□ 1.07
CLSTN3-210ENST00000540931 CIAO1O76071 339 aa21.76■■□□□ 1.07
CLSTN3-210ENST00000540931 NEFLP07196 543 aa21.76■■□□□ 1.07
CLSTN3-210ENST00000540931 MPNDQ8N594 471 aa21.76■■□□□ 1.07
CLSTN3-210ENST00000540931 PODXL2Q9NZ53 605 aa21.76■■□□□ 1.07
CLSTN3-210ENST00000540931 ARHGAP27Q6ZUM4 889 aa21.75■■□□□ 1.07
CLSTN3-210ENST00000540931 SSH3Q8TE77 659 aa21.75■■□□□ 1.07
CLSTN3-210ENST00000540931 SLX4Q8IY92 1834 aa21.75■■□□□ 1.07
CLSTN3-210ENST00000540931 XDHP47989 1333 aa21.75■■□□□ 1.07
CLSTN3-210ENST00000540931 CEP85Q6P2H3 762 aa21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 DPP8Q6V1X1 898 aaPredicted RBP21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 CRBNQ96SW2 442 aa21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 EYA3Q99504 573 aa21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 TAOK3Q9H2K8 898 aa21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 ANKIB1Q9P2G1 1089 aa21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 LEMD3Q9Y2U8 911 aa21.74■■□□□ 1.07
CLSTN3-210ENST00000540931 EYA2O00167 538 aa21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 ATP2B4P23634 1241 aa21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 IL15P40933 162 aaPredicted RBP21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 FKBP4Q02790 459 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 PTPN12Q05209 780 aaKnown RBP21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 POLA2Q14181 598 aa21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 RTFDC1Q9BY42 306 aaPredicted RBP21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 NMRK2Q9NPI5 230 aa21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 MINPP1Q9UNW1 487 aa21.73■■□□□ 1.07
CLSTN3-210ENST00000540931 RFX5P48382 616 aaPredicted RBP21.72■■□□□ 1.07
CLSTN3-210ENST00000540931 G3BP1Q13283 466 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLSTN3-210ENST00000540931 NSFL1CQ9UNZ2 370 aaKnown RBP21.72■■□□□ 1.07
CLSTN3-210ENST00000540931 ERC1Q8IUD2 1116 aa21.71■■□□□ 1.07
CLSTN3-210ENST00000540931 GGA1Q9UJY5 639 aa21.71■■□□□ 1.07
CLSTN3-210ENST00000540931 LRRC37AA6NMS7 1700 aa21.71■■□□□ 1.07
CLSTN3-210ENST00000540931 RIPOR2Q9Y4F9 1068 aa21.7■■□□□ 1.06
CLSTN3-210ENST00000540931 CACNA1SQ13698 1873 aa21.7■■□□□ 1.06
CLSTN3-210ENST00000540931 LMNB1P20700 586 aa21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 KCNJ4P48050 445 aa21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 CHRNDQ07001 517 aa21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 C1orf115Q9H7X2 142 aa21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 CEP126Q9P2H0 1117 aa21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 ZNF219Q9P2Y4 722 aaPredicted RBP21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 AKAP2Q9Y2D5 859 aa21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 NOP58Q9Y2X3 529 aaKnown RBP21.69■■□□□ 1.06
CLSTN3-210ENST00000540931 PNMA6EA0A0J9YXQ4 647 aa21.68■■□□□ 1.06
CLSTN3-210ENST00000540931 UBE4AQ14139 1066 aa21.68■■□□□ 1.06
CLSTN3-210ENST00000540931 METTL24Q5JXM2 366 aa21.68■■□□□ 1.06
CLSTN3-210ENST00000540931 ERICH6BQ5W0A0 696 aa21.68■■□□□ 1.06
CLSTN3-210ENST00000540931 ZNF594Q96JF6 807 aaPredicted RBP21.68■■□□□ 1.06
CLSTN3-210ENST00000540931 ZC3H4Q9UPT8 1303 aaKnown RBP21.68■■□□□ 1.06
CLSTN3-210ENST00000540931 RAB11FIP3O75154 756 aa21.67■■□□□ 1.06
CLSTN3-210ENST00000540931 SURF6O75683 361 aaKnown RBP21.67■■□□□ 1.06
CLSTN3-210ENST00000540931 OS9Q13438 667 aaPredicted RBP21.67■■□□□ 1.06
CLSTN3-210ENST00000540931 C9orf131Q5VYM1 1079 aa21.67■■□□□ 1.06
CLSTN3-210ENST00000540931 RBM46Q8TBY0 533 aaKnown RBP21.67■■□□□ 1.06
CLSTN3-210ENST00000540931 ZC3H12CQ9C0D7 883 aaKnown RBP21.67■■□□□ 1.06
CLSTN3-210ENST00000540931 FER1L6Q2WGJ9 1857 aa21.66■■□□□ 1.06
CLSTN3-210ENST00000540931 C6orf229H3BNL8 230 aa21.66■■□□□ 1.06
CLSTN3-210ENST00000540931 PDE8BO95263 885 aa21.66■■□□□ 1.06
CLSTN3-210ENST00000540931 JDP2Q8WYK2 163 aa21.66■■□□□ 1.06
CLSTN3-210ENST00000540931 RWDD1Q9H446 243 aaPredicted RBP21.66■■□□□ 1.06
CLSTN3-210ENST00000540931 ZNF804BA4D1E1 1349 aa21.65■■□□□ 1.06
CLSTN3-210ENST00000540931 UFL1O94874 794 aa21.65■■□□□ 1.06
CLSTN3-210ENST00000540931 GPSM2P81274 684 aa21.65■■□□□ 1.06
CLSTN3-210ENST00000540931 WASHC4Q2M389 1173 aa21.65■■□□□ 1.06
CLSTN3-210ENST00000540931 C15orf52Q6ZUT6 534 aaKnown RBP21.65■■□□□ 1.06
CLSTN3-210ENST00000540931 TBC1D16Q8TBP0 767 aa21.65■■□□□ 1.06
CLSTN3-210ENST00000540931 TAF1P21675 1872 aa21.64■■□□□ 1.06
CLSTN3-210ENST00000540931 SNED1Q8TER0 1413 aa21.64■■□□□ 1.06
CLSTN3-210ENST00000540931 IARSP41252 1262 aaKnown RBP21.64■■□□□ 1.05
CLSTN3-210ENST00000540931 PUM3Q15397 648 aaKnown RBP21.64■■□□□ 1.05
CLSTN3-210ENST00000540931 SIL1Q9H173 461 aa21.64■■□□□ 1.05
CLSTN3-210ENST00000540931 GPR108Q9NPR9 543 aa21.64■■□□□ 1.05
CLSTN3-210ENST00000540931 G3V3G9 751 aa21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 NFKBIEO00221 500 aa21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 IFIT1P09914 478 aaKnown RBP21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 KIAA2012Q0VF49 1180 aa21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 HDAC1Q13547 482 aaPredicted RBP21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 DCAF8Q5TAQ9 597 aa21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 ATG9AQ7Z3C6 839 aa21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 EXOC6Q8TAG9 804 aa21.63■■□□□ 1.05
CLSTN3-210ENST00000540931 MED23Q9ULK4 1368 aa21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 LRRC24Q50LG9 513 aa21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 KLHDC4Q8TBB5 520 aa21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 LPIN2Q92539 896 aa21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 GCC1Q96CN9 775 aa21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 PUS3Q9BZE2 481 aaKnown RBP21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 ZBTB47Q9UFB7 747 aaPredicted RBP21.62■■□□□ 1.05
CLSTN3-210ENST00000540931 PPIP5K2O43314 1243 aa21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 SLC5A1P13866 664 aa21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 CAVIN4Q5BKX8 364 aa21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 LARGE2Q8N3Y3 721 aa21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 KIF1BPQ96EK5 621 aa21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 POLLQ9UGP5 575 aa21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 PA2G4Q9UQ80 394 aaKnown RBP21.61■■□□□ 1.05
CLSTN3-210ENST00000540931 WDR90Q96KV7 1748 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 SPEF2Q9C093 1822 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 FSTL1Q12841 308 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 ZNF804AQ7Z570 1209 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 SIRT2Q8IXJ6 389 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 NIM1KQ8IY84 436 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms