RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 TNIP1Q15025 636 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 FAM161AQ3B820 660 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 BEND3Q5T5X7 828 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 TBC1D16Q8TBP0 767 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 CDCA7LQ96GN5 454 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 PLA2G12BQ9BX93 195 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 BCL2L13Q9BXK5 485 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 C9orf78Q9NZ63 289 aaPredicted RBP16.33■□□□□ 0.2
CHMP3-208ENST00000486404 POLLQ9UGP5 575 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 CHMP3Q9Y3E7 222 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 PTPRCP08575 1304 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 SCN9AQ15858 1988 aa16.33■□□□□ 0.2
CHMP3-208ENST00000486404 ECE2O60344 883 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 SCNN1DP51172 638 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 CXCL9Q07325 125 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 GPR101Q96P66 508 aaPredicted RBP16.32■□□□□ 0.2
CHMP3-208ENST00000486404 ZC3H12CQ9C0D7 883 aaKnown RBP16.32■□□□□ 0.2
CHMP3-208ENST00000486404 SRCIN1Q9C0H9 1055 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 DBNDD1Q9H9R9 158 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 SMC4Q9NTJ3 1288 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 PODXL2Q9NZ53 605 aa16.32■□□□□ 0.2
CHMP3-208ENST00000486404 GRM8O00222 908 aa16.31■□□□□ 0.2
CHMP3-208ENST00000486404 ALDH1L1O75891 902 aa16.31■□□□□ 0.2
CHMP3-208ENST00000486404 ITGA6P23229 1130 aa16.31■□□□□ 0.2
CHMP3-208ENST00000486404 GMPSP49915 693 aaPredicted RBP16.31■□□□□ 0.2
CHMP3-208ENST00000486404 CASP7P55210 303 aa16.31■□□□□ 0.2
CHMP3-208ENST00000486404 MRPL50Q8N5N7 158 aaKnown RBP16.31■□□□□ 0.2
CHMP3-208ENST00000486404 MPHOSPH8Q99549 860 aa16.31■□□□□ 0.2
CHMP3-208ENST00000486404 TRPM7Q96QT4 1865 aa16.31■□□□□ 0.2
CHMP3-208ENST00000486404 ATP2B4P23634 1241 aa16.3■□□□□ 0.2
CHMP3-208ENST00000486404 HTRA3P83110 453 aa16.3■□□□□ 0.2
CHMP3-208ENST00000486404 DOK7Q18PE1 504 aa16.3■□□□□ 0.2
CHMP3-208ENST00000486404 MIER1Q8N108 512 aa16.3■□□□□ 0.2
CHMP3-208ENST00000486404 SSH1Q8WYL5 1049 aa16.3■□□□□ 0.2
CHMP3-208ENST00000486404 BSDC1Q9NW68 430 aaPredicted RBP16.3■□□□□ 0.2
CHMP3-208ENST00000486404 GPRC5DQ9NZD1 345 aa16.3■□□□□ 0.2
CHMP3-208ENST00000486404 ANKRD18BA2A2Z9 1011 aa16.29■□□□□ 0.2
CHMP3-208ENST00000486404 YDJCA8MPS7 323 aa16.29■□□□□ 0.2
CHMP3-208ENST00000486404 CT47B1P0C2W7 299 aaPredicted RBP16.29■□□□□ 0.2
CHMP3-208ENST00000486404 EPS15P42566 896 aa16.29■□□□□ 0.2
CHMP3-208ENST00000486404 ALDH1L2Q3SY69 923 aa16.29■□□□□ 0.2
CHMP3-208ENST00000486404 MED23Q9ULK4 1368 aa16.28■□□□□ 0.2
CHMP3-208ENST00000486404 IFIT5Q13325 482 aaKnown RBP16.28■□□□□ 0.2
CHMP3-208ENST00000486404 TAF7LQ5H9L4 462 aa16.28■□□□□ 0.2
CHMP3-208ENST00000486404 USP50Q70EL3 339 aaPredicted RBP16.28■□□□□ 0.2
CHMP3-208ENST00000486404 ADARB2Q9NS39 739 aaKnown RBP16.28■□□□□ 0.2
CHMP3-208ENST00000486404 PSMD14O00487 310 aa16.27■□□□□ 0.2
CHMP3-208ENST00000486404 KCNJ4P48050 445 aa16.27■□□□□ 0.2
CHMP3-208ENST00000486404 MAP1SQ66K74 1059 aaPredicted RBP16.27■□□□□ 0.2
CHMP3-208ENST00000486404 ANKRD2Q9GZV1 360 aa16.27■□□□□ 0.2
CHMP3-208ENST00000486404 MINPP1Q9UNW1 487 aa16.27■□□□□ 0.2
CHMP3-208ENST00000486404 CSF1RP07333 972 aa16.26■□□□□ 0.19
CHMP3-208ENST00000486404 CCT4P50991 539 aaKnown RBP16.26■□□□□ 0.19
CHMP3-208ENST00000486404 HNRNPUQ00839 825 aaKnown RBP eCLIP16.26■□□□□ 0.19
CHMP3-208ENST00000486404 LMBR1LQ6UX01 489 aa16.26■□□□□ 0.19
CHMP3-208ENST00000486404 KLRG1Q96E93 195 aa16.26■□□□□ 0.19
CHMP3-208ENST00000486404 ZNF646O15015 1829 aaPredicted RBP16.25■□□□□ 0.19
CHMP3-208ENST00000486404 H7C1D1 291 aa16.25■□□□□ 0.19
CHMP3-208ENST00000486404 RPS12P25398 132 aaKnown RBP16.25■□□□□ 0.19
CHMP3-208ENST00000486404 FOXO4P98177 505 aa16.25■□□□□ 0.19
CHMP3-208ENST00000486404 CCDC57Q2TAC2 916 aa16.25■□□□□ 0.19
CHMP3-208ENST00000486404 MICALL2Q8IY33 904 aa16.25■□□□□ 0.19
CHMP3-208ENST00000486404 TRMT2AQ8IZ69 625 aaKnown RBP16.25■□□□□ 0.19
CHMP3-208ENST00000486404 CNTROBQ8N137 903 aa16.25■□□□□ 0.19
CHMP3-208ENST00000486404 CREBZFQ9NS37 354 aa16.25■□□□□ 0.19
CHMP3-208ENST00000486404 PASKQ96RG2 1323 aa16.24■□□□□ 0.19
CHMP3-208ENST00000486404 CNOT7Q9UIV1 285 aaKnown RBP16.24■□□□□ 0.19
CHMP3-208ENST00000486404 LEMD3Q9Y2U8 911 aa16.24■□□□□ 0.19
CHMP3-208ENST00000486404 ZBTB12Q9Y330 459 aaPredicted RBP16.24■□□□□ 0.19
CHMP3-208ENST00000486404 ZNF804BA4D1E1 1349 aa16.23■□□□□ 0.19
CHMP3-208ENST00000486404 KIF16BQ96L93 1317 aa16.23■□□□□ 0.19
CHMP3-208ENST00000486404 CHRNDQ07001 517 aa16.23■□□□□ 0.19
CHMP3-208ENST00000486404 FBXW7Q969H0 707 aa16.23■□□□□ 0.19
CHMP3-208ENST00000486404 SUCLG2Q96I99 432 aa16.23■□□□□ 0.19
CHMP3-208ENST00000486404 NBPF7P0C2Y1 421 aaPredicted RBP16.22■□□□□ 0.19
CHMP3-208ENST00000486404 EPHA10Q5JZY3 1008 aa16.22■□□□□ 0.19
CHMP3-208ENST00000486404 DNAJC5GQ8N7S2 189 aa16.22■□□□□ 0.19
CHMP3-208ENST00000486404 TRPM4Q8TD43 1214 aa16.22■□□□□ 0.19
CHMP3-208ENST00000486404 DPF2Q92785 391 aa16.22■□□□□ 0.19
CHMP3-208ENST00000486404 CNNM1Q9NRU3 951 aa16.22■□□□□ 0.19
CHMP3-208ENST00000486404 UTYO14607 1347 aa16.21■□□□□ 0.19
CHMP3-208ENST00000486404 ZNF609O15014 1411 aa16.21■□□□□ 0.19
CHMP3-208ENST00000486404 TMEM88BA6NKF7 163 aa16.21■□□□□ 0.19
CHMP3-208ENST00000486404 ITGBL1O95965 494 aaPredicted RBP16.21■□□□□ 0.19
CHMP3-208ENST00000486404 PODNQ7Z5L7 613 aa16.21■□□□□ 0.19
CHMP3-208ENST00000486404 API5Q9BZZ5 524 aaKnown RBP16.21■□□□□ 0.19
CHMP3-208ENST00000486404 KCNQ5Q9NR82 932 aa16.21■□□□□ 0.19
CHMP3-208ENST00000486404 ARAP2Q8WZ64 1704 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 SHTN1A0MZ66 631 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 USP17L3A6NCW0 530 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 USP17L4A6NCW7 530 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 RSBN1LQ6PCB5 846 aaPredicted RBP16.2■□□□□ 0.18
CHMP3-208ENST00000486404 LDHAL6AQ6ZMR3 332 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 USP17L1Q7RTZ2 530 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 ZNF594Q96JF6 807 aaPredicted RBP16.2■□□□□ 0.18
CHMP3-208ENST00000486404 COA1Q9GZY4 146 aa16.2■□□□□ 0.18
CHMP3-208ENST00000486404 BICC1Q9H694 974 aaKnown RBP16.2■□□□□ 0.18
CHMP3-208ENST00000486404 NOB1Q9ULX3 412 aaKnown RBP16.2■□□□□ 0.18
CHMP3-208ENST00000486404 MYH13Q9UKX3 1938 aa16.19■□□□□ 0.18
CHMP3-208ENST00000486404 POLR2AP24928 1970 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms