RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 FAM161AQ3B820 660 aa16.14■□□□□ 0.17
PRPF40A-203ENST00000448428 EPHA10Q5JZY3 1008 aa16.14■□□□□ 0.17
PRPF40A-203ENST00000448428 MINPP1Q9UNW1 487 aa16.14■□□□□ 0.17
PRPF40A-203ENST00000448428 WTIPA6NIX2 430 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-203ENST00000448428 RAD17O75943 681 aa16.13■□□□□ 0.17
PRPF40A-203ENST00000448428 UFL1O94874 794 aa16.13■□□□□ 0.17
PRPF40A-203ENST00000448428 EPHX2P34913 555 aa16.13■□□□□ 0.17
PRPF40A-203ENST00000448428 EYA3Q99504 573 aa16.13■□□□□ 0.17
PRPF40A-203ENST00000448428 GGA1Q9UJY5 639 aa16.13■□□□□ 0.17
PRPF40A-203ENST00000448428 NBPF7P0C2Y1 421 aaPredicted RBP16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 IGHMBP2P38935 993 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 SCNN1DP51172 638 aa16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 DOK7Q18PE1 504 aa16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 CIAPIN1Q6FI81 312 aa16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 LMBR1LQ6UX01 489 aa16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 ZC3H12CQ9C0D7 883 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 DBNDD1Q9H9R9 158 aa16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 XDHP47989 1333 aa16.12■□□□□ 0.17
PRPF40A-203ENST00000448428 ANKRD18BA2A2Z9 1011 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 EPS15P42566 896 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 APLP1P51693 650 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 RARSP54136 660 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 BRPF1P55201 1214 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 TNIP1Q15025 636 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 EAPPQ56P03 285 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 CHADLQ6NUI6 762 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 KAZALD1Q96I82 304 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 KCNQ5Q9NR82 932 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 NOB1Q9ULX3 412 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 UTYO14607 1347 aa16.11■□□□□ 0.17
PRPF40A-203ENST00000448428 ECE2O60344 883 aa16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 ATP2B4P23634 1241 aa16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 LMOD1P29536 600 aaPredicted RBP16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 IFIT5Q13325 482 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 PNMA8AQ86V59 439 aaPredicted RBP16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 LDHDQ86WU2 507 aa16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 SUCLG2Q96I99 432 aa16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 MPHOSPH8Q99549 860 aa16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 CHMP3Q9Y3E7 222 aa16.1■□□□□ 0.17
PRPF40A-203ENST00000448428 GMPSP49915 693 aaPredicted RBP16.09■□□□□ 0.17
PRPF40A-203ENST00000448428 CCT4P50991 539 aaKnown RBP16.09■□□□□ 0.17
PRPF40A-203ENST00000448428 USP44Q9H0E7 712 aa16.09■□□□□ 0.17
PRPF40A-203ENST00000448428 GPRC5DQ9NZD1 345 aa16.09■□□□□ 0.17
PRPF40A-203ENST00000448428 CLEC11AQ9Y240 323 aa16.09■□□□□ 0.17
PRPF40A-203ENST00000448428 SCN9AQ15858 1988 aa16.09■□□□□ 0.17
PRPF40A-203ENST00000448428 ADAMTSL1Q8N6G6 1762 aa16.08■□□□□ 0.17
PRPF40A-203ENST00000448428 G3V3G9 751 aa16.08■□□□□ 0.16
PRPF40A-203ENST00000448428 PSMD14O00487 310 aa16.08■□□□□ 0.16
PRPF40A-203ENST00000448428 HTRA3P83110 453 aa16.08■□□□□ 0.16
PRPF40A-203ENST00000448428 DCAF8Q5TAQ9 597 aa16.08■□□□□ 0.16
PRPF40A-203ENST00000448428 ZNF594Q96JF6 807 aaPredicted RBP16.08■□□□□ 0.16
PRPF40A-203ENST00000448428 CHRNDQ07001 517 aa16.07■□□□□ 0.16
PRPF40A-203ENST00000448428 CCDC57Q2TAC2 916 aa16.07■□□□□ 0.16
PRPF40A-203ENST00000448428 ANKRD2Q9GZV1 360 aa16.07■□□□□ 0.16
PRPF40A-203ENST00000448428 LEMD3Q9Y2U8 911 aa16.07■□□□□ 0.16
PRPF40A-203ENST00000448428 ZBTB12Q9Y330 459 aaPredicted RBP16.07■□□□□ 0.16
PRPF40A-203ENST00000448428 ITGBL1O95965 494 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-203ENST00000448428 USP50Q70EL3 339 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-203ENST00000448428 DNAJC5GQ8N7S2 189 aa16.06■□□□□ 0.16
PRPF40A-203ENST00000448428 API5Q9BZZ5 524 aaKnown RBP16.06■□□□□ 0.16
PRPF40A-203ENST00000448428 BICC1Q9H694 974 aaKnown RBP16.06■□□□□ 0.16
PRPF40A-203ENST00000448428 CNOT7Q9UIV1 285 aaKnown RBP16.06■□□□□ 0.16
PRPF40A-203ENST00000448428 ZNF804BA4D1E1 1349 aa16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 SHTN1A0MZ66 631 aa16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 MAP1SQ66K74 1059 aaPredicted RBP16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 TXNRD3Q86VQ6 643 aa16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 HELBQ8NG08 1087 aaPredicted RBP16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 ARHGAP45Q92619 1136 aa16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 ADARB2Q9NS39 739 aaKnown RBP16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 PSME4Q14997 1843 aa16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 A0A1B0GUL6 1792 aa16.05■□□□□ 0.16
PRPF40A-203ENST00000448428 MED23Q9ULK4 1368 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 TAF5LO75529 589 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 BCAR3O75815 825 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 VIL1P09327 827 aaKnown RBP16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 RABL6Q3YEC7 729 aaPredicted RBP16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 TAF7LQ5H9L4 462 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 LDHAL6AQ6ZMR3 332 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 PODNQ7Z5L7 613 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 CNTROBQ8N137 903 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 ANKRD44Q8N8A2 993 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 DPF2Q92785 391 aa16.04■□□□□ 0.16
PRPF40A-203ENST00000448428 ZBED9Q6R2W3 1325 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 KIF16BQ96L93 1317 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 PASKQ96RG2 1323 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 SNAP23O00161 211 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 KLRK1P26718 216 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 HIRAP54198 1017 aaPredicted RBP16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 MICALL2Q8IY33 904 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 CNNM1Q9NRU3 951 aa16.03■□□□□ 0.16
PRPF40A-203ENST00000448428 H7C1D1 291 aa16.02■□□□□ 0.16
PRPF40A-203ENST00000448428 PLIN1O60240 522 aa16.02■□□□□ 0.16
PRPF40A-203ENST00000448428 RPS12P25398 132 aaKnown RBP16.02■□□□□ 0.16
PRPF40A-203ENST00000448428 KCNJ4P48050 445 aa16.02■□□□□ 0.16
PRPF40A-203ENST00000448428 PUS3Q9BZE2 481 aaKnown RBP16.02■□□□□ 0.16
PRPF40A-203ENST00000448428 USP17L3A6NCW0 530 aa16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 USP17L4A6NCW7 530 aa16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 IPO8O15397 1037 aaKnown RBP16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 USP17L1Q7RTZ2 530 aa16.01■□□□□ 0.15
PRPF40A-203ENST00000448428 SAMD7Q7Z3H4 446 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms