RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PXDNQ92626 1479 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 NEURL1BA8MQ27 555 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 NRDCO43847 1150 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 KINO60870 393 aaKnown RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 HSP90B1P14625 803 aaKnown RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 KCNJ6P48051 423 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 GCKRQ14397 625 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 TPD52L1Q16890 204 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 TAF3Q5VWG9 929 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 MPRIPQ6WCQ1 1025 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CHRDL2Q6WN34 429 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CREBRFQ8IUR6 639 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 PGBD1Q96JS3 809 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 HAUS7Q99871 368 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 METTL22Q9BUU2 404 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 HELLSQ9NRZ9 838 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 MST1RQ04912 1400 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 BECN2A8MW95 431 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 NR1I2O75469 434 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 FAM160A1Q05DH4 1040 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 NCBP1Q09161 790 aaKnown RBP12.92□□□□□ -0.34
LIMS1-207ENST00000422797 IQCB1Q15051 598 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 LRRFIP1Q32MZ4 808 aaKnown RBP12.92□□□□□ -0.34
LIMS1-207ENST00000422797 RABL6Q3YEC7 729 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-207ENST00000422797 SLFNL1Q499Z3 407 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 TNNI3KQ59H18 835 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 FBXL16Q8N461 479 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 DSCC1Q9BVC3 393 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 AGXT2Q9BYV1 514 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 GPR108Q9NPR9 543 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 FPGT-TNNI3KV9GXZ4 949 aa12.92□□□□□ -0.34
LIMS1-207ENST00000422797 SPEF2Q9C093 1822 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 ANXA1P04083 346 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 TPM4P67936 248 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 FGD1P98174 961 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 PSME1Q06323 249 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 PROSER3Q2NL68 480 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 TPRNQ4KMQ1 711 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 CEP135Q66GS9 1140 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 Q6ZUG5 572 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 DHX32Q7L7V1 743 aaKnown RBP12.91□□□□□ -0.34
LIMS1-207ENST00000422797 ARHGEF25Q86VW2 580 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 BPIFA3Q9BQP9 254 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 DNAJC25Q9H1X3 360 aa12.91□□□□□ -0.34
LIMS1-207ENST00000422797 TFIP11Q9UBB9 837 aaKnown RBP12.91□□□□□ -0.34
LIMS1-207ENST00000422797 A0A1W2PQ27 194 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 A0A1W2PQ64 194 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 A0A1W2PQD8 194 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 CCP110O43303 1012 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 IGKV5-2P06315 115 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 ZNF589Q86UQ0 364 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-207ENST00000422797 LRRC8AQ8IWT6 810 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 CCDC150Q8NCX0 1101 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 ZNF274Q96GC6 653 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-207ENST00000422797 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.9□□□□□ -0.34
LIMS1-207ENST00000422797 TLR7Q9NYK1 1049 aaKnown RBP12.9□□□□□ -0.34
LIMS1-207ENST00000422797 CHMP3Q9Y3E7 222 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 MYH15Q9Y2K3 1946 aa12.9□□□□□ -0.34
LIMS1-207ENST00000422797 TMEM94Q12767 1356 aa12.89□□□□□ -0.35
LIMS1-207ENST00000422797 PDIA6Q15084 440 aa12.89□□□□□ -0.35
LIMS1-207ENST00000422797 CCAR1Q8IX12 1150 aaKnown RBP12.89□□□□□ -0.35
LIMS1-207ENST00000422797 KBTBD3Q8NAB2 608 aa12.89□□□□□ -0.35
LIMS1-207ENST00000422797 NSUN7Q8NE18 718 aaKnown RBP12.89□□□□□ -0.35
LIMS1-207ENST00000422797 ANKRD24Q8TF21 1146 aa12.89□□□□□ -0.35
LIMS1-207ENST00000422797 ERO1AQ96HE7 468 aa12.89□□□□□ -0.35
LIMS1-207ENST00000422797 C16orf45Q96MC5 204 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-207ENST00000422797 ZNF609O15014 1411 aa12.89□□□□□ -0.35
LIMS1-207ENST00000422797 MYO1BO43795 1136 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 CBX1P83916 185 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 STK3Q13188 491 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 PTPN14Q15678 1187 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 ZRSR1Q15695 479 aaKnown RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 FAM173BQ6P4H8 233 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 NYAP1Q6ZVC0 841 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 ZNF397Q8NF99 534 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 CACTINQ8WUQ7 758 aaKnown RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 OSBPL5Q9H0X9 879 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 DBNLQ9UJU6 430 aaKnown RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 KIF1AQ12756 1690 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 RGPD2P0DJD1 1756 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 DHX16O60231 1041 aaKnown RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 JAK2O60674 1132 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 GCP02774 474 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 RFX5P48382 616 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 SCRN1Q12765 414 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 LRMPQ12912 555 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 ATP2B3Q16720 1220 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 ZNF790Q6PG37 636 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 KIF18AQ8NI77 898 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 KCNG4Q8TDN1 519 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 MRPS27Q92552 414 aaKnown RBP12.88□□□□□ -0.35
LIMS1-207ENST00000422797 TSC1Q92574 1164 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 CTNNA3Q9UI47 895 aa12.88□□□□□ -0.35
LIMS1-207ENST00000422797 SALL1Q9NSC2 1324 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 PTPDC1A2A3K4 754 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 YEATS4O95619 227 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 CYP21A2P08686 494 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 SKILP12757 684 aa12.87□□□□□ -0.35
LIMS1-207ENST00000422797 ADD1P35611 737 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms