RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NUTM2BA6NNL0 878 aaPredicted RBP18.72■□□□□ 0.59
HMGA1-202ENST00000347617 NUTM2EB1AL46 878 aaPredicted RBP18.72■□□□□ 0.59
HMGA1-202ENST00000347617 NBPF26B4DH59 902 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 PTGS1P23219 599 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 ZNF75DP51815 510 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 NBPF14Q5TI25 921 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 RNF20Q5VTR2 975 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 NBPF10Q6P3W6 841 aaKnown RBP18.72■□□□□ 0.59
HMGA1-202ENST00000347617 NUTM2AQ8IVF1 878 aaPredicted RBP18.72■□□□□ 0.59
HMGA1-202ENST00000347617 NBPF15Q8N660 670 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 CERKQ8TCT0 537 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 ZSWIM6Q9HCJ5 1215 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 PDRG1Q9NUG6 133 aa18.72■□□□□ 0.59
HMGA1-202ENST00000347617 CCDC66A2RUB6 948 aa18.71■□□□□ 0.59
HMGA1-202ENST00000347617 GCKRQ14397 625 aa18.71■□□□□ 0.59
HMGA1-202ENST00000347617 ZNF771Q7L3S4 317 aaPredicted RBP18.71■□□□□ 0.59
HMGA1-202ENST00000347617 FNBP4Q8N3X1 1017 aaPredicted RBP18.71■□□□□ 0.59
HMGA1-202ENST00000347617 STARD3NLO95772 234 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 TNNT1P13805 278 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 VPS72Q15906 364 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 CWF19L2Q2TBE0 894 aaKnown RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 KIF2AO00139 706 aaPredicted RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 SRGAP3O43295 1099 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 PTCD1O75127 700 aaKnown RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 GLRX3O76003 335 aaKnown RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 CASTP20810 708 aaKnown RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 ANKRD1Q15327 319 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 ZSCAN25Q6NSZ9 544 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 CCDC186Q7Z3E2 898 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 ZNF397Q8NF99 534 aaPredicted RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 RHPN1Q8TCX5 695 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 ALDH8A1Q9H2A2 487 aaPredicted RBP18.7■□□□□ 0.58
HMGA1-202ENST00000347617 TNMDQ9H2S6 317 aa18.7■□□□□ 0.58
HMGA1-202ENST00000347617 SLFNL1Q499Z3 407 aa18.69■□□□□ 0.58
HMGA1-202ENST00000347617 DRC7Q8IY82 874 aa18.69■□□□□ 0.58
HMGA1-202ENST00000347617 CLSTN2Q9H4D0 955 aa18.69■□□□□ 0.58
HMGA1-202ENST00000347617 ASAP1Q9ULH1 1129 aa18.69■□□□□ 0.58
HMGA1-202ENST00000347617 FAM177BA6PVY3 158 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 PSMA5P28066 241 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 SARM1Q6SZW1 724 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 CCDC83Q8IWF9 413 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 RASEFQ8IZ41 740 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 MYD88Q99836 296 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 CBX8Q9HC52 389 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 GOLGA6L4A6NEF3 574 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 HIP1O00291 1037 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 A1BGP04217 495 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 ZKSCAN1P17029 563 aaPredicted RBP18.68■□□□□ 0.58
HMGA1-202ENST00000347617 KRT222Q8N1A0 295 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 TRIM5Q9C035 493 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 IL25Q9H293 177 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 KCND1Q9NSA2 647 aa18.68■□□□□ 0.58
HMGA1-202ENST00000347617 BCL9LQ86UU0 1499 aa18.67■□□□□ 0.58
HMGA1-202ENST00000347617 DHX8Q14562 1220 aaKnown RBP18.67■□□□□ 0.58
HMGA1-202ENST00000347617 ARFGEF2Q9Y6D5 1785 aa18.66■□□□□ 0.58
HMGA1-202ENST00000347617 VPS37CA5D8V6 355 aaPredicted RBP18.66■□□□□ 0.58
HMGA1-202ENST00000347617 SURF6O75683 361 aaKnown RBP18.66■□□□□ 0.58
HMGA1-202ENST00000347617 RBM6P78332 1123 aaKnown RBP18.66■□□□□ 0.58
HMGA1-202ENST00000347617 TPD52L1Q16890 204 aaPredicted RBP18.66■□□□□ 0.58
HMGA1-202ENST00000347617 LARP1BQ659C4 914 aaKnown RBP18.66■□□□□ 0.58
HMGA1-202ENST00000347617 TTC6Q86TZ1 520 aa18.66■□□□□ 0.58
HMGA1-202ENST00000347617 ERC1Q8IUD2 1116 aa18.66■□□□□ 0.58
HMGA1-202ENST00000347617 KIF18AQ8NI77 898 aa18.66■□□□□ 0.58
HMGA1-202ENST00000347617 GPATCH3Q96I76 525 aa18.66■□□□□ 0.58
HMGA1-202ENST00000347617 NGLY1Q96IV0 654 aa18.66■□□□□ 0.58
HMGA1-202ENST00000347617 ANO6Q4KMQ2 910 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 MRFAP1L1Q96HT8 127 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 KAZALD1Q96I82 304 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 JAKMIP1Q96N16 626 aaKnown RBP18.65■□□□□ 0.58
HMGA1-202ENST00000347617 TUBB4AP04350 444 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 TRIM28Q13263 835 aaKnown RBP18.65■□□□□ 0.58
HMGA1-202ENST00000347617 CEP135Q66GS9 1140 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 NUTM1Q86Y26 1132 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 CCDC191Q8NCU4 936 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 SUCLG2Q96I99 432 aa18.65■□□□□ 0.58
HMGA1-202ENST00000347617 CTAGE5O15320 804 aa18.64■□□□□ 0.57
HMGA1-202ENST00000347617 LARGE1O95461 756 aa18.64■□□□□ 0.57
HMGA1-202ENST00000347617 MARCH10Q8NA82 808 aaPredicted RBP18.64■□□□□ 0.57
HMGA1-202ENST00000347617 ERO1AQ96HE7 468 aa18.64■□□□□ 0.57
HMGA1-202ENST00000347617 C16orf45Q96MC5 204 aaPredicted RBP18.64■□□□□ 0.57
HMGA1-202ENST00000347617 IL1RAPL2Q9NP60 686 aa18.64■□□□□ 0.57
HMGA1-202ENST00000347617 H7C1W4 665 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 SLFN14P0C7P3 912 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 RABL6Q3YEC7 729 aaPredicted RBP18.63■□□□□ 0.57
HMGA1-202ENST00000347617 LUZP1Q86V48 1076 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 DNAJC10Q8IXB1 793 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 SPATA32Q96LK8 384 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 FAM53CQ9NYF3 392 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 CLIP2Q9UDT6 1046 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.63■□□□□ 0.57
HMGA1-202ENST00000347617 MYH15Q9Y2K3 1946 aa18.63■□□□□ 0.57
HMGA1-202ENST00000347617 CYP19A1P11511 503 aaPredicted RBP18.63■□□□□ 0.57
HMGA1-202ENST00000347617 CCDC9Q9Y3X0 531 aaKnown RBP18.63■□□□□ 0.57
HMGA1-202ENST00000347617 NUP188Q5SRE5 1749 aa18.62■□□□□ 0.57
HMGA1-202ENST00000347617 LIG1P18858 919 aa18.62■□□□□ 0.57
HMGA1-202ENST00000347617 PIP4K2AP48426 406 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-202ENST00000347617 ZNF165P49910 485 aa18.62■□□□□ 0.57
HMGA1-202ENST00000347617 CASP7P55210 303 aa18.62■□□□□ 0.57
HMGA1-202ENST00000347617 CWC27Q6UX04 472 aaKnown RBP18.62■□□□□ 0.57
HMGA1-202ENST00000347617 TTLL7Q6ZT98 887 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 150.8 ms