RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RTL9Q8NET4 1388 aa22.55■■□□□ 1.2
HMGA1-201ENST00000311487 DALRD3Q5D0E6 543 aaKnown RBP22.54■■□□□ 1.2
HMGA1-201ENST00000311487 ATG9AQ7Z3C6 839 aa22.54■■□□□ 1.2
HMGA1-201ENST00000311487 COPRSQ9NQ92 184 aa22.54■■□□□ 1.2
HMGA1-201ENST00000311487 BSDC1Q9NW68 430 aaPredicted RBP22.53■■□□□ 1.2
HMGA1-201ENST00000311487 MINPP1Q9UNW1 487 aa22.53■■□□□ 1.2
HMGA1-201ENST00000311487 EYA2O00167 538 aa22.53■■□□□ 1.2
HMGA1-201ENST00000311487 BBOX1O75936 387 aa22.53■■□□□ 1.2
HMGA1-201ENST00000311487 G3BP1Q13283 466 aaKnown RBP eCLIP22.53■■□□□ 1.2
HMGA1-201ENST00000311487 AAMPQ13685 434 aa22.53■■□□□ 1.2
HMGA1-201ENST00000311487 CCDC136Q96JN2 1154 aa22.53■■□□□ 1.2
HMGA1-201ENST00000311487 GPR101Q96P66 508 aaPredicted RBP22.53■■□□□ 1.2
HMGA1-201ENST00000311487 SMARCA5O60264 1052 aaPredicted RBP22.52■■□□□ 1.2
HMGA1-201ENST00000311487 CHRNDQ07001 517 aa22.52■■□□□ 1.2
HMGA1-201ENST00000311487 RWDD1Q9H446 243 aaPredicted RBP22.52■■□□□ 1.2
HMGA1-201ENST00000311487 NSFL1CQ9UNZ2 370 aaKnown RBP22.52■■□□□ 1.2
HMGA1-201ENST00000311487 RIPOR2Q9Y4F9 1068 aa22.52■■□□□ 1.2
HMGA1-201ENST00000311487 TFCP2Q12800 502 aa22.51■■□□□ 1.19
HMGA1-201ENST00000311487 ANKIB1Q9P2G1 1089 aa22.51■■□□□ 1.19
HMGA1-201ENST00000311487 PDZRN3Q9UPQ7 1066 aa22.51■■□□□ 1.19
HMGA1-201ENST00000311487 GPSM2P81274 684 aa22.51■■□□□ 1.19
HMGA1-201ENST00000311487 METTL24Q5JXM2 366 aa22.51■■□□□ 1.19
HMGA1-201ENST00000311487 SASH1O94885 1247 aa22.5■■□□□ 1.19
HMGA1-201ENST00000311487 HDAC1Q13547 482 aaPredicted RBP22.5■■□□□ 1.19
HMGA1-201ENST00000311487 IL1RAPL2Q9NP60 686 aa22.5■■□□□ 1.19
HMGA1-201ENST00000311487 ATP6V0A2Q9Y487 856 aa22.5■■□□□ 1.19
HMGA1-201ENST00000311487 C7orf43Q8WVR3 580 aa22.49■■□□□ 1.19
HMGA1-201ENST00000311487 LRP5O75197 1615 aa22.49■■□□□ 1.19
HMGA1-201ENST00000311487 DLEC1Q9Y238 1755 aa22.49■■□□□ 1.19
HMGA1-201ENST00000311487 YBX3P16989 372 aaKnown RBP eCLIP22.49■■□□□ 1.195e-37■■□□□ 14
HMGA1-201ENST00000311487 DCTPP1Q9H773 170 aa22.49■■□□□ 1.19
HMGA1-201ENST00000311487 SP8Q8IXZ3 490 aa22.48■■□□□ 1.19
HMGA1-201ENST00000311487 NOP58Q9Y2X3 529 aaKnown RBP22.48■■□□□ 1.19
HMGA1-201ENST00000311487 SKAP1Q86WV1 359 aa22.47■■□□□ 1.19
HMGA1-201ENST00000311487 BRCA1P38398 1863 aaKnown RBP22.46■■□□□ 1.19
HMGA1-201ENST00000311487 IL15P40933 162 aaPredicted RBP22.46■■□□□ 1.19
HMGA1-201ENST00000311487 ANKRD45Q5TZF3 282 aa22.46■■□□□ 1.19
HMGA1-201ENST00000311487 CIAO1O76071 339 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 KLRK1P26718 216 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 TIMM10P62072 90 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 RHPN1Q8TCX5 695 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 TMX4Q9H1E5 349 aaPredicted RBP22.45■■□□□ 1.18
HMGA1-201ENST00000311487 CEP126Q9P2H0 1117 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 GPR162Q16538 588 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 POLLQ9UGP5 575 aa22.45■■□□□ 1.18
HMGA1-201ENST00000311487 MROH5Q6ZUA9 1318 aa22.44■■□□□ 1.18
HMGA1-201ENST00000311487 C6orf229H3BNL8 230 aa22.44■■□□□ 1.18
HMGA1-201ENST00000311487 DPP8Q6V1X1 898 aaPredicted RBP22.44■■□□□ 1.18
HMGA1-201ENST00000311487 MPNDQ8N594 471 aa22.44■■□□□ 1.18
HMGA1-201ENST00000311487 VGLL2Q8N8G2 317 aa22.44■■□□□ 1.18
HMGA1-201ENST00000311487 UFL1O94874 794 aa22.43■■□□□ 1.18
HMGA1-201ENST00000311487 PDE8BO95263 885 aa22.43■■□□□ 1.18
HMGA1-201ENST00000311487 C16orf71Q8IYS4 520 aaPredicted RBP22.43■■□□□ 1.18
HMGA1-201ENST00000311487 NEUROD6Q96NK8 337 aa22.43■■□□□ 1.18
HMGA1-201ENST00000311487 RIMBP2O15034 1052 aa22.43■■□□□ 1.18
HMGA1-201ENST00000311487 KCNJ4P48050 445 aa22.43■■□□□ 1.18
HMGA1-201ENST00000311487 ARHGAP27Q6ZUM4 889 aa22.42■■□□□ 1.18
HMGA1-201ENST00000311487 TXNRD3Q86VQ6 643 aa22.42■■□□□ 1.18
HMGA1-201ENST00000311487 LRRCC1Q9C099 1032 aa22.42■■□□□ 1.18
HMGA1-201ENST00000311487 CCDC8Q9H0W5 538 aaPredicted RBP22.42■■□□□ 1.18
HMGA1-201ENST00000311487 RASSF7Q02833 373 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 TBC1D16Q8TBP0 767 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 LNPKQ9C0E8 428 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 TLR7Q9NYK1 1049 aaKnown RBP22.41■■□□□ 1.18
HMGA1-201ENST00000311487 XDHP47989 1333 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 ADORA1P30542 326 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 CCDC93Q567U6 631 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 ZNF277Q9NRM2 450 aaPredicted RBP22.41■■□□□ 1.18
HMGA1-201ENST00000311487 GGA1Q9UJY5 639 aa22.41■■□□□ 1.18
HMGA1-201ENST00000311487 HSP90AB4PQ58FF6 505 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 TMC4Q7Z404 712 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 SMC5Q8IY18 1101 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 EAF2Q96CJ1 260 aaPredicted RBP22.4■■□□□ 1.18
HMGA1-201ENST00000311487 GCC1Q96CN9 775 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 KIF1BPQ96EK5 621 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 ANKRD2Q9GZV1 360 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 ZNF804BA4D1E1 1349 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 KDM2BQ8NHM5 1336 aa22.4■■□□□ 1.18
HMGA1-201ENST00000311487 RAB11FIP3O75154 756 aa22.39■■□□□ 1.18
HMGA1-201ENST00000311487 AACSQ86V21 672 aa22.39■■□□□ 1.18
HMGA1-201ENST00000311487 OTUD7AQ8TE49 926 aaPredicted RBP22.39■■□□□ 1.18
HMGA1-201ENST00000311487 FBXO3Q9UK99 471 aa22.39■■□□□ 1.18
HMGA1-201ENST00000311487 A0A1B0GUL7 405 aa22.39■■□□□ 1.17
HMGA1-201ENST00000311487 ATP2B3Q16720 1220 aa22.39■■□□□ 1.17
HMGA1-201ENST00000311487 TNNI3KQ59H18 835 aa22.39■■□□□ 1.17
HMGA1-201ENST00000311487 FPGT-TNNI3KV9GXZ4 949 aa22.39■■□□□ 1.17
HMGA1-201ENST00000311487 PUM3Q15397 648 aaKnown RBP22.38■■□□□ 1.17
HMGA1-201ENST00000311487 TSHZ3Q63HK5 1081 aa22.38■■□□□ 1.17
HMGA1-201ENST00000311487 ERC1Q8IUD2 1116 aa22.38■■□□□ 1.17
HMGA1-201ENST00000311487 NFKBIEO00221 500 aa22.37■■□□□ 1.17
HMGA1-201ENST00000311487 GYG1P46976 350 aa22.37■■□□□ 1.17
HMGA1-201ENST00000311487 AOC3Q16853 763 aa22.37■■□□□ 1.17
HMGA1-201ENST00000311487 IQSEC3Q9UPP2 1182 aaPredicted RBP22.37■■□□□ 1.17
HMGA1-201ENST00000311487 RTKN2Q8IZC4 609 aa22.37■■□□□ 1.17
HMGA1-201ENST00000311487 PODXL2Q9NZ53 605 aa22.37■■□□□ 1.17
HMGA1-201ENST00000311487 LRRC37AA6NMS7 1700 aa22.36■■□□□ 1.17
HMGA1-201ENST00000311487 PRELPP51888 382 aa22.36■■□□□ 1.17
HMGA1-201ENST00000311487 DOK7Q18PE1 504 aa22.36■■□□□ 1.17
HMGA1-201ENST00000311487 DBNDD2Q9BQY9 259 aa22.36■■□□□ 1.17
HMGA1-201ENST00000311487 DUOX1Q9NRD9 1551 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms