RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 PDE8AO60658 829 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 PSEN1P49768 467 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 FOXO4P98177 505 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 FKBP4Q02790 459 aaKnown RBP eCLIP11.69□□□□□ -0.54
HMGN1-201ENST00000288344 GRAPQ13588 217 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 RTL5Q5HYW3 569 aaPredicted RBP11.69□□□□□ -0.54
HMGN1-201ENST00000288344 SOGA3Q5TF21 947 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 RTKN2Q8IZC4 609 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 GRAPLQ8TC17 118 aaPredicted RBP11.69□□□□□ -0.54
HMGN1-201ENST00000288344 RTL9Q8NET4 1388 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 LRRC37AA6NMS7 1700 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 LTBP1Q14766 1721 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 PTPRCP08575 1304 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 ZC3H4Q9UPT8 1303 aaKnown RBP11.69□□□□□ -0.54
HMGN1-201ENST00000288344 TIE1P35590 1138 aa11.68□□□□□ -0.54
HMGN1-201ENST00000288344 HNRNPUQ00839 825 aaKnown RBP eCLIP11.68□□□□□ -0.54
HMGN1-201ENST00000288344 GRIPAP1Q4V328 841 aa11.68□□□□□ -0.54
HMGN1-201ENST00000288344 CCDC93Q567U6 631 aa11.68□□□□□ -0.54
HMGN1-201ENST00000288344 RPGRQ92834 1020 aaKnown RBP11.68□□□□□ -0.54
HMGN1-201ENST00000288344 SEC31BQ9NQW1 1179 aa11.68□□□□□ -0.54
HMGN1-201ENST00000288344 KIF3CO14782 793 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 PPEF1O14829 653 aaPredicted RBP11.67□□□□□ -0.54
HMGN1-201ENST00000288344 ALDH1L1O75891 902 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 RPS8P62241 208 aaKnown RBP11.67□□□□□ -0.54
HMGN1-201ENST00000288344 NEXNQ0ZGT2 675 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 EPHA10Q5JZY3 1008 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 TAOK3Q9H2K8 898 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 RYDENQ9NUL5 291 aaKnown RBP11.67□□□□□ -0.54
HMGN1-201ENST00000288344 RNF181Q9P0P0 153 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 TRPC6Q9Y210 931 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 DUOX1Q9NRD9 1551 aa11.67□□□□□ -0.54
HMGN1-201ENST00000288344 FZD9O00144 591 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 CTSWP56202 376 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 DDX46Q7L014 1031 aaKnown RBP11.66□□□□□ -0.54
HMGN1-201ENST00000288344 UBE3BQ7Z3V4 1068 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 ARHGAP45Q92619 1136 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 BCL2L13Q9BXK5 485 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 USP44Q9H0E7 712 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 MYH3P11055 1940 aa11.66□□□□□ -0.54
HMGN1-201ENST00000288344 GLTPD2A6NH11 291 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 GRM8O00222 908 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 ATMINO43313 823 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-201ENST00000288344 NBPF7P0C2Y1 421 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-201ENST00000288344 TPRNQ4KMQ1 711 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 ASTLQ6HA08 431 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-201ENST00000288344 TMC4Q7Z404 712 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 MFRPQ9BY79 579 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 VPS33BQ9H267 617 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 GREM2Q9H772 168 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 ZNF277Q9NRM2 450 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-201ENST00000288344 BMP2KQ9NSY1 1161 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-201ENST00000288344 PODXL2Q9NZ53 605 aa11.65□□□□□ -0.54
HMGN1-201ENST00000288344 NOB1Q9ULX3 412 aaKnown RBP11.65□□□□□ -0.54
HMGN1-201ENST00000288344 BCAR3O75815 825 aa11.64□□□□□ -0.55
HMGN1-201ENST00000288344 HSP90B1P14625 803 aaKnown RBP11.64□□□□□ -0.55
HMGN1-201ENST00000288344 WTIPA6NIX2 430 aaPredicted RBP11.63□□□□□ -0.55
HMGN1-201ENST00000288344 IARSP41252 1262 aaKnown RBP11.63□□□□□ -0.55
HMGN1-201ENST00000288344 RABL6Q3YEC7 729 aaPredicted RBP11.63□□□□□ -0.55
HMGN1-201ENST00000288344 CCDC152Q4G0S7 254 aa11.63□□□□□ -0.55
HMGN1-201ENST00000288344 SRCIN1Q9C0H9 1055 aa11.63□□□□□ -0.55
HMGN1-201ENST00000288344 POLLQ9UGP5 575 aa11.63□□□□□ -0.55
HMGN1-201ENST00000288344 GPSM2P81274 684 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 INTS3Q68E01 1043 aaKnown RBP11.62□□□□□ -0.55
HMGN1-201ENST00000288344 SUCLG2Q96I99 432 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 NMRK2Q9NPI5 230 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 SMC4Q9NTJ3 1288 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 BSDC1Q9NW68 430 aaPredicted RBP11.62□□□□□ -0.55
HMGN1-201ENST00000288344 TNNQ9UQP3 1299 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 WDR90Q96KV7 1748 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 IRS2Q9Y4H2 1338 aa11.62□□□□□ -0.55
HMGN1-201ENST00000288344 ATN1P54259 1190 aaPredicted RBP11.61□□□□□ -0.55
HMGN1-201ENST00000288344 KIAA2012Q0VF49 1180 aa11.61□□□□□ -0.55
HMGN1-201ENST00000288344 TIAM2Q8IVF5 1701 aa11.61□□□□□ -0.55
HMGN1-201ENST00000288344 MPNDQ8N594 471 aa11.61□□□□□ -0.55
HMGN1-201ENST00000288344 ANKRD44Q8N8A2 993 aa11.61□□□□□ -0.55
HMGN1-201ENST00000288344 L3MBTL3Q96JM7 780 aaPredicted RBP11.61□□□□□ -0.55
HMGN1-201ENST00000288344 MINPP1Q9UNW1 487 aa11.61□□□□□ -0.55
HMGN1-201ENST00000288344 TTLL13PA6NNM8 815 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 DDNO94850 711 aaPredicted RBP11.6□□□□□ -0.55
HMGN1-201ENST00000288344 ITGA6P23229 1130 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 SLC4A10Q6U841 1118 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 TBC1D16Q8TBP0 767 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 CCDC85AQ96PX6 553 aaPredicted RBP11.6□□□□□ -0.55
HMGN1-201ENST00000288344 TMEM106CQ9BVX2 250 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 GPBP1L1Q9HC44 474 aaPredicted RBP11.6□□□□□ -0.55
HMGN1-201ENST00000288344 PCNTO95613 3336 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 YDJCA8MPS7 323 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 TRIM27P14373 513 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 FAM161AQ3B820 660 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 LMBR1LQ6UX01 489 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 RRAGCQ9HB90 399 aa11.6□□□□□ -0.55
HMGN1-201ENST00000288344 ZNF541Q9H0D2 1346 aa11.59□□□□□ -0.55
HMGN1-201ENST00000288344 RFX5P48382 616 aaPredicted RBP11.59□□□□□ -0.55
HMGN1-201ENST00000288344 DPP8Q6V1X1 898 aaPredicted RBP11.59□□□□□ -0.55
HMGN1-201ENST00000288344 ATF7IPQ6VMQ6 1270 aa11.59□□□□□ -0.55
HMGN1-201ENST00000288344 ANKRD18AQ8IVF6 992 aa11.59□□□□□ -0.55
HMGN1-201ENST00000288344 ZNF526Q8TF50 670 aaPredicted RBP11.59□□□□□ -0.55
HMGN1-201ENST00000288344 API5Q9BZZ5 524 aaKnown RBP11.59□□□□□ -0.55
HMGN1-201ENST00000288344 C9orf78Q9NZ63 289 aaPredicted RBP11.59□□□□□ -0.55
HMGN1-201ENST00000288344 NSFL1CQ9UNZ2 370 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms