RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 UBE3BQ7Z3V4 1068 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 HSCBQ8IWL3 235 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 NIM1KQ8IY84 436 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 ANKRD31Q8N7Z5 1873 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 BBOX1O75936 387 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 GRAPQ13588 217 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 AOC3Q16853 763 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 CCDC191Q8NCU4 936 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 GRAPLQ8TC17 118 aaPredicted RBP10.61□□□□□ -0.71
VPS4B-201ENST00000238497 CELF1Q92879 486 aaKnown RBP10.61□□□□□ -0.71
VPS4B-201ENST00000238497 TBC1D2Q9BYX2 928 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 KIAA1551Q9HCM1 1747 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 HTRA3P83110 453 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 ZBTB38Q8NAP3 1195 aaPredicted RBP10.6□□□□□ -0.71
VPS4B-201ENST00000238497 SEC31BQ9NQW1 1179 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 ANKIB1Q9P2G1 1089 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 ATP6V0A2Q9Y487 856 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 BCORQ6W2J9 1755 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 HSPA6P17066 643 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 CCDC152Q4G0S7 254 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 DNAAF4Q8WXU2 420 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 GCC1Q96CN9 775 aa10.6□□□□□ -0.71
VPS4B-201ENST00000238497 IBTKQ9P2D0 1353 aaPredicted RBP10.59□□□□□ -0.71
VPS4B-201ENST00000238497 NRXN2Q9P2S2 1712 aa10.59□□□□□ -0.71
VPS4B-201ENST00000238497 RPS8P62241 208 aaKnown RBP10.59□□□□□ -0.71
VPS4B-201ENST00000238497 LRRFIP2Q9Y608 721 aaKnown RBP10.59□□□□□ -0.71
VPS4B-201ENST00000238497 CACNA1SQ13698 1873 aa10.59□□□□□ -0.71
VPS4B-201ENST00000238497 FOXD4L5Q5VV16 416 aaPredicted RBP10.59□□□□□ -0.71
VPS4B-201ENST00000238497 FOXD4L4Q8WXT5 416 aaPredicted RBP10.59□□□□□ -0.71
VPS4B-201ENST00000238497 ARHGAP45Q92619 1136 aa10.59□□□□□ -0.71
VPS4B-201ENST00000238497 GPR101Q96P66 508 aaPredicted RBP10.59□□□□□ -0.71
VPS4B-201ENST00000238497 ZNF541Q9H0D2 1346 aa10.59□□□□□ -0.71
VPS4B-201ENST00000238497 BRCA1P38398 1863 aaKnown RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 HMMRO75330 724 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 LMOD1P29536 600 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 TBC1D32Q96NH3 1257 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 COL11A2P13942 1736 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 LTBP3Q9NS15 1303 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 ZC3H4Q9UPT8 1303 aaKnown RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 PDE8AO60658 829 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 SURF6O75683 361 aaKnown RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 RAD17O75943 681 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 IGKV5-2P06315 115 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 UBTFL1P0CB47 393 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 TRIM28Q13263 835 aaKnown RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 ARFGEF1Q9Y6D6 1849 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 GNAI2P04899 355 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 PCCAP05165 728 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 TBC1D9Q6ZT07 1266 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 SP8Q8IXZ3 490 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 SMC1BQ8NDV3 1235 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 SUPT20HQ8NEM7 779 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 PSMD1Q99460 953 aa10.58□□□□□ -0.72
VPS4B-201ENST00000238497 C9orf78Q9NZ63 289 aaPredicted RBP10.58□□□□□ -0.72
VPS4B-201ENST00000238497 IQCA1LA6NCM1 817 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 CEP85Q6P2H3 762 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 ANKRD18AQ8IVF6 992 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 NEURL1BA8MQ27 555 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 POTEIP0CG38 1075 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 POTEJP0CG39 1038 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 DOK7Q18PE1 504 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 DBNDD1Q9H9R9 158 aa10.57□□□□□ -0.72
VPS4B-201ENST00000238497 SF3B3Q15393 1217 aaKnown RBP10.56□□□□□ -0.72
VPS4B-201ENST00000238497 WASHC4Q2M389 1173 aa10.56□□□□□ -0.72
VPS4B-201ENST00000238497 RBM46Q8TBY0 533 aaKnown RBP10.56□□□□□ -0.72
VPS4B-201ENST00000238497 FBXW7Q969H0 707 aa10.56□□□□□ -0.72
VPS4B-201ENST00000238497 PNMA6EA0A0J9YXQ4 647 aa10.56□□□□□ -0.72
VPS4B-201ENST00000238497 UFL1O94874 794 aa10.56□□□□□ -0.72
VPS4B-201ENST00000238497 NCBP3Q53F19 620 aaKnown RBP10.56□□□□□ -0.72
VPS4B-201ENST00000238497 TAF7LQ5H9L4 462 aa10.56□□□□□ -0.72
VPS4B-201ENST00000238497 ZC3H12CQ9C0D7 883 aaKnown RBP10.56□□□□□ -0.72
VPS4B-201ENST00000238497 HACL1Q9UJ83 578 aa10.56□□□□□ -0.72
VPS4B-201ENST00000238497 CDC5LQ99459 802 aaKnown RBP10.56□□□□□ -0.72
VPS4B-201ENST00000238497 TNRC6CQ9HCJ0 1690 aaKnown RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 FOXD4L6Q3SYB3 417 aaPredicted RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 FOXD4L3Q6VB84 417 aaPredicted RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 MPHOSPH8Q99549 860 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 CCDC88AQ3V6T2 1871 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 SRGAP3O43295 1099 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 EPHX2P34913 555 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 CCT4P50991 539 aaKnown RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 CTSWP56202 376 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 GPSM2P81274 684 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 GCKRQ14397 625 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 GRIPAP1Q4V328 841 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 PLEKHM2Q8IWE5 1019 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 ANKRD44Q8N8A2 993 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 LINS1Q8NG48 757 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 SIL1Q9H173 461 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 GREM2Q9H772 168 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 IGHMBP2P38935 993 aaKnown RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 KCNJ4P48050 445 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 INTS3Q68E01 1043 aaKnown RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 CASC1Q6TDU7 716 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 RPAP2Q8IXW5 612 aaPredicted RBP10.55□□□□□ -0.72
VPS4B-201ENST00000238497 ZNRF3Q9ULT6 936 aa10.55□□□□□ -0.72
VPS4B-201ENST00000238497 APLP1P51693 650 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 RBM26Q5T8P6 1007 aaKnown RBP10.54□□□□□ -0.72
VPS4B-201ENST00000238497 SRCIN1Q9C0H9 1055 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 TAF1DQ9H5J8 278 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms