RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CDK20Q8IZL9 346 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 SLC22A24Q8N4F4 322 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 NANOS1Q8WY41 292 aaKnown RBP16.65■□□□□ 0.26
CLN3-260ENST00000637578 MCHR2Q969V1 340 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 FBXO17Q96EF6 278 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 PLK3Q9H4B4 646 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 DNAJB9Q9UBS3 223 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 FN1P02751 2386 aaKnown RBP16.65■□□□□ 0.26
CLN3-260ENST00000637578 TLN2Q9Y4G6 2542 aa16.65■□□□□ 0.26
CLN3-260ENST00000637578 EFCAB9A8MZ26 197 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 GNGT2O14610 69 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 OR10H3O60404 316 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 ENTPD5O75356 428 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 TRMUO75648 421 aaKnown RBP16.64■□□□□ 0.25
CLN3-260ENST00000637578 F12P00748 615 aaPredicted RBP16.64■□□□□ 0.25
CLN3-260ENST00000637578 EFNA4P52798 201 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 RAB1AP62820 205 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 PIGFQ07326 219 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 TMPRSS11FQ6ZWK6 438 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 ZER1Q7Z7L7 766 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 NOXO1Q8NFA2 376 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 OR13C2Q8NGS9 318 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 FGFBP3Q8TAT2 258 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 HTRA1Q92743 480 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 NMD3Q96D46 503 aaKnown RBP16.64■□□□□ 0.25
CLN3-260ENST00000637578 TXNIPQ9H3M7 391 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 STX18Q9P2W9 335 aaKnown RBP16.64■□□□□ 0.25
CLN3-260ENST00000637578 A0A096LNT2 108 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 DEAF1O75398 565 aaPredicted RBP16.64■□□□□ 0.25
CLN3-260ENST00000637578 CCNB2O95067 398 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 UBL3O95164 117 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 OR8G3PP0DMU2 310 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 NR4A1P22736 598 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 THBS4P35443 961 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 GIPRP48546 466 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 CLRN1P58418 232 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 TAF11Q15544 211 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 ANKDD1AQ495B1 522 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 C10orf128Q5T292 105 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 TMEM179BQ7Z7N9 219 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 LRRC75AQ8NAA5 344 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 OR9Q2Q8NGE9 314 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 MS4A3Q96HJ5 214 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 GPA33Q99795 319 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 RHNO1Q9BSD3 238 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 KRCC1Q9NPI7 259 aaPredicted RBP16.64■□□□□ 0.25
CLN3-260ENST00000637578 FBXL3Q9UKT7 428 aa16.64■□□□□ 0.25
CLN3-260ENST00000637578 IGHV4-30-2A0A087WSY4 118 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 TRAV27A0A087WT01 109 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 MCIDASD6RGH6 385 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 IGHMP01871 453 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 PTDSS1P48651 473 aaKnown RBP16.63■□□□□ 0.25
CLN3-260ENST00000637578 SNRPD2P62316 118 aaKnown RBP16.63■□□□□ 0.25
CLN3-260ENST00000637578 ATP6AP1Q15904 470 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 ALG10Q5BKT4 473 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 ZNF770Q6IQ21 691 aaPredicted RBP16.63■□□□□ 0.25
CLN3-260ENST00000637578 PGBD2Q6P3X8 592 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 OAFQ86UD1 273 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 ZNF584Q8IVC4 421 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 OR51A7Q8NH64 312 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 SMURF2Q9HAU4 748 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 NTN4Q9HB63 628 aa16.63■□□□□ 0.25
CLN3-260ENST00000637578 NAV3Q8IVL0 2385 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 TMEM129A0AVI4 362 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 H3BNX3 289 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 MGRN1O60291 552 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 E2F6O75461 281 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 SERPINA5P05154 406 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 FASP25445 335 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 IFNGR2P38484 337 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 DAG1Q14118 895 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 GK3PQ14409 553 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 MICAQ29983 383 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 ZFP1Q6P2D0 407 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 VHLLQ6RSH7 139 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 DPPA2Q7Z7J5 298 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 SYT14Q8NB59 555 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 MAPK1IP1LQ8NDC0 245 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 LRTOMTQ8WZ04 291 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 HDAC2Q92769 488 aaKnown RBP16.62■□□□□ 0.25
CLN3-260ENST00000637578 KCNK17Q96T54 332 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 DOK1Q99704 481 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 SH3GL3Q99963 347 aa16.62■□□□□ 0.25
CLN3-260ENST00000637578 FBXO9Q9UK97 447 aaPredicted RBP16.62■□□□□ 0.25
CLN3-260ENST00000637578 HIVEP2P31629 2446 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 VSTM5A8MXK1 200 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 FARS2O95363 451 aaKnown RBP16.61■□□□□ 0.25
CLN3-260ENST00000637578 RAB36O95755 333 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 PATE4P0C8F1 98 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 FCGR1AP12314 374 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 NPR2P20594 1047 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 SLC9A3P48764 834 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 PPOXP50336 477 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 C1orf94Q6P1W5 598 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 CLEC2AQ6UVW9 174 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 AMIGO2Q86SJ2 522 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 HS3ST5Q8IZT8 346 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 LINC00471Q8N535 108 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 ZNF525Q8N782 197 aa16.61■□□□□ 0.25
CLN3-260ENST00000637578 SORCS2Q96PQ0 1159 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms