RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PRSS45Q7RTY3 260 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 DND1Q8IYX4 353 aaKnown RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF687Q8N1G0 1237 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 BEST3Q8N1M1 668 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 C12orf45Q8N5I9 185 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 INO80EQ8NBZ0 244 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 OR51L1Q8NGJ5 315 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 OR13C5Q8NGS8 318 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 OR51Q1Q8NH59 317 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 THAP6Q8TBB0 222 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PHOSPHO1Q8TCT1 267 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZDHHC1Q8WTX9 485 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 THEM6Q8WUY1 208 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 METTL21AQ8WXB1 218 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PEX11GQ96HA9 241 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SMIM10Q96HG1 83 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 GPX7Q96SL4 187 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PDCD1LG2Q9BQ51 273 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 SEC22CQ9BRL7 303 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 MFFQ9GZY8 342 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF107Q9UII5 783 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-214ENST00000637038 KLK13Q9UKR3 277 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PLEKHA6Q9Y2H5 1048 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 PLEKHM1Q9Y4G2 1056 aa3.62□□□□□ -1.83
SCN1A-214ENST00000637038 FANCMQ8IYD8 2048 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 TRAV18A0A075B6X5 111 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 TMEM200CA6NKL6 621 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 MCIDASD6RGH6 385 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 H7C417 338 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 TERTO14746 1132 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 NUDT21O43809 227 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 RDH16O75452 317 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 IFNA6P05013 189 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 OR8G3PP0DMU2 310 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF823P16415 610 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 POU3F2P20265 443 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 S1PR1P21453 382 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 RORAP35398 523 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PGDP52209 483 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 DCAF7P61962 342 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PRAMEF17Q5VTA0 474 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PWWP2BQ6NUJ5 590 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 HSD17B13Q7Z5P4 300 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 OR6N1Q8NGY5 312 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 OR1E3Q8WZA6 343 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PMEPA1Q969W9 287 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PNPLA2Q96AD5 504 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PRRT1Q99946 306 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 UTP23Q9BRU9 249 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ATG5Q9H1Y0 275 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 SEMA6CQ9H3T2 930 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 CPNE7Q9UBL6 633 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 MTFP1Q9UDX5 166 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 MMP17Q9ULZ9 603 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PLCL2Q9UPR0 1127 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 A0A1B0GWJ7 208 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 GGT3PA6NGU5 568 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 NUDT19A8MXV4 375 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 CLN5O75503 358 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 LYPD3O95274 346 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ZIC2O95409 532 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 RAB3DO95716 219 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 NUDT14O95848 222 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 HEXBP07686 556 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ACSM4P0C7M7 580 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 CLUP10909 449 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 PGCP20142 388 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 DPP4P27487 766 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 TAS2R31P59538 309 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 SNRPNP63162 240 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 RBPJQ06330 500 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 MFSD13AQ14CX5 517 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 LINC00303Q3SY05 128 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 LIPNQ5VXI9 398 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 KLHL24Q6TFL4 600 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 KIRREL2Q6UWL6 708 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF627Q7L945 461 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF584Q8IVC4 421 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 SERPINA12Q8IW75 414 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 SPAG16Q8N0X2 631 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 C12orf76Q8N812 135 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 OR2AK2Q8NG84 335 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 OR6M1Q8NGM8 313 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 LHFPL5Q8TAF8 219 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 LMX1AQ8TE12 382 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 NARS2Q96I59 477 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 BMFQ96LC9 184 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 KXD1Q9BQD3 176 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF426Q9BUY5 554 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 APMAPQ9HDC9 416 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 IFT46Q9NQC8 304 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 EXOSC3Q9NQT5 275 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 SLCO1C1Q9NYB5 712 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 FLRT3Q9NZU0 649 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 NOP16Q9Y3C1 178 aaKnown RBP3.61□□□□□ -1.83
SCN1A-214ENST00000637038 CACNA1HO95180 2353 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 TMEM82A0PJX8 343 aa3.61□□□□□ -1.83
SCN1A-214ENST00000637038 TMEM72A0PK05 275 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms