RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TROVE2P10155 538 aaKnown RBP eCLIP17.93■□□□□ 0.46
VPS53-216ENST00000574029 PCGF2P35227 344 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 UGT2B15P54855 530 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 RPL18Q07020 188 aaKnown RBP17.93■□□□□ 0.46
VPS53-216ENST00000574029 C10orf128Q5T292 105 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 CGB2Q6NT52 195 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 C1QL2Q7Z5L3 287 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 LRRC18Q8N456 261 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 CPEB3Q8NE35 698 aaKnown RBP17.93■□□□□ 0.46
VPS53-216ENST00000574029 ASB10Q8WXI3 467 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 DECR2Q9NUI1 292 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 WIPI2Q9Y4P8 454 aa17.93■□□□□ 0.46
VPS53-216ENST00000574029 A0A0G2JMP0 313 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 A0A0X1KG70 313 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 A0A1W2PRG6 482 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 CLDN25C9JDP6 229 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 J3QLI3 93 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 TRMUO75648 421 aaKnown RBP17.92■□□□□ 0.46
VPS53-216ENST00000574029 MT-ND1P03886 318 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 MT-ND5P03915 603 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 F13BP05160 661 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 ACADSP16219 412 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 DRD4P21917 467 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 APLNRP35414 380 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 CRYBA2P53672 197 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 HFEQ30201 348 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 HDDC2Q7Z4H3 204 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 SYT14Q8NB59 555 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 ICA1LQ8NDH6 482 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 OR4M2Q8NGB6 313 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 OR1J1Q8NGS3 322 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 SLC26A7Q8TE54 656 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 ZMYND19Q96E35 227 aaPredicted RBP17.92■□□□□ 0.46
VPS53-216ENST00000574029 JMJD8Q96S16 334 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 RBM4Q9BWF3 364 aaKnown RBP17.92■□□□□ 0.46
VPS53-216ENST00000574029 SIAEQ9HAT2 523 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 CACNG2Q9Y698 323 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 TENM1Q9UKZ4 2725 aa17.92■□□□□ 0.46
VPS53-216ENST00000574029 MCIDASD6RGH6 385 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 ANGPT2O15123 496 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 TPD52L2O43399 206 aaKnown RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 SPRY1O43609 319 aaPredicted RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 TSPAN19P0C672 248 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 FUT1P19526 365 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 DAP3P51398 398 aaKnown RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 ZNF81P51508 661 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 MRPS34P82930 218 aaKnown RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 HSF2Q03933 536 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 GLO1Q04760 184 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 TSTQ16762 297 aaKnown RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 PABPC1L2AQ5JQF8 200 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 FAM209AQ5JX71 171 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 INTS11Q5TA45 600 aaKnown RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 RASSF5Q8WWW0 418 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 GCDHQ92947 438 aaPredicted RBP17.91■□□□□ 0.46
VPS53-216ENST00000574029 TMEM120AQ9BXJ8 343 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 SAP30LQ9HAJ7 183 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 UGT2A1Q9Y4X1 527 aa17.91■□□□□ 0.46
VPS53-216ENST00000574029 OR7A10O76100 309 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 IGF2P01344 180 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 STOMP27105 288 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 RBM34P42696 430 aaKnown RBP17.9■□□□□ 0.46
VPS53-216ENST00000574029 GZMMP51124 257 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 MMP15P51511 669 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 NFYCQ13952 458 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 TMEM255AQ5JRV8 349 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 ARMC4Q5T2S8 1044 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 CCDC80Q76M96 950 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 C3orf56Q8N813 242 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 OR10A6Q8NH74 314 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 TSPEARQ8WU66 669 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 RAB1CQ92928 201 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 NABP1Q96AH0 204 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 NMD3Q96D46 503 aaKnown RBP17.9■□□□□ 0.46
VPS53-216ENST00000574029 ELMOD3Q96FG2 381 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 MARS2Q96GW9 593 aaKnown RBP17.9■□□□□ 0.46
VPS53-216ENST00000574029 TIMD4Q96H15 378 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 POM121L2Q96KW2 1035 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 KCNN2Q9H2S1 579 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 NANOGQ9H9S0 305 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 SMURF2Q9HAU4 748 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 INIPQ9NRY2 104 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 MRGBPQ9NV56 204 aa17.9■□□□□ 0.46
VPS53-216ENST00000574029 STX18Q9P2W9 335 aaKnown RBP17.9■□□□□ 0.46
VPS53-216ENST00000574029 SLC2A10O95528 541 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 IGHV1-46P01743 117 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 ZNF32P17041 273 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 EGR1P18146 543 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 CCNOP22674 350 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 CDAP32320 146 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 AQP2P41181 271 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 WNT5AP41221 380 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 LIMS1P48059 325 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 VMACQ2NL98 169 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 ZNF718Q3SXZ3 478 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 DCAF12L2Q5VW00 463 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 NKAIN4Q8IVV8 208 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 ZNF101Q8IZC7 436 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 PFN4Q8NHR9 129 aa17.89■□□□□ 0.45
VPS53-216ENST00000574029 LIPHQ8WWY8 451 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms