RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 AGAP4Q96P64 663 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ATOH8Q96SQ7 321 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 NDUFAF3Q9BU61 184 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 C20orf24Q9BUV8 137 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 MFFQ9GZY8 342 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 LHPPQ9H008 270 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 MTHFD2LQ9H903 347 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 UBTD1Q9HAC8 227 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ZNF71Q9NQZ8 489 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 NPAP1Q9NZP6 1156 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 PSMC3IPQ9P2W1 217 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 PLEKHB1Q9UF11 243 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 DCDC2Q9UHG0 476 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 IKZF3Q9UKT9 509 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 RASD1Q9Y272 281 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 GTF3C1Q12789 2109 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 SMG1Q96Q15 3661 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 DIDO1Q9BTC0 2240 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 HELZ2Q9BYK8 2649 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 LRIT2A6NDA9 550 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 FAM90A26D6RGX4 464 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 HDAC3O15379 428 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ERI3O43414 337 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 SLC28A2O43868 658 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 TPST2O60704 377 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 GALR3O60755 368 aaPredicted RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 RBMXL2O75526 392 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 CEACAM4O75871 244 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 OR2F2O95006 317 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 PRB1P04280 392 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 UMODP07911 640 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 GSTA1P08263 222 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ANXA4P09525 319 aaPredicted RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 SMIM18P0DKX4 95 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 LAP3P28838 519 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 MAGEA12P43365 314 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 XCR1P46094 333 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 FHITP49789 147 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 RAP1GDS1P52306 607 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 IST1P53990 364 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 TSPAN5P62079 268 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 PPIAP62937 165 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 BTN3A2P78410 334 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 IFFO1Q0D2I5 559 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 PNRC1Q12796 327 aaPredicted RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 DLG1Q12959 904 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 BIKQ13323 160 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 EXOSC2Q13868 293 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 GTF2H2Q13888 395 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 TAF13Q15543 124 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 NSDHLQ15738 373 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 SYPL1Q16563 259 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 EIF2S3LQ2VIR3 472 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 C18orf21Q32NC0 220 aaPredicted RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 MOGAT2Q3SYC2 334 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 LINC01620Q4KN68 170 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 DEFB134Q4QY38 66 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 TMEM35AQ53FP2 167 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ALG10Q5BKT4 473 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 TECRLQ5HYJ1 363 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ALG10BQ5I7T1 473 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 LCN1P1Q5VSP4 162 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 GTF2H2CQ6P1K8 395 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 EMBQ6PCB8 327 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 SHISA6Q6ZSJ9 500 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 CPEB2Q7Z5Q1 589 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 TMEM123Q8N131 208 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 GABRG1Q8N1C3 465 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 SLC5A8Q8N695 610 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 TMEM99Q8N816 258 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ZNF740Q8NDX6 193 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 PLPP5Q8NEB5 264 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 PROKR2Q8NFJ6 384 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 FDCSPQ8NFU4 85 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 OR2L5Q8NG80 312 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 OR11G2Q8NGC1 345 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 OR5T3Q8NGG3 340 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 OR14A16Q8NHC5 309 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 CDC26Q8NHZ8 85 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 CCDC107Q8WV48 283 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 DDB2Q92466 427 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 CCDC126Q96EE4 140 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 MRPL53Q96EL3 112 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 WDR34Q96EX3 536 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 CMTM7Q96FZ5 175 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 LPAR4Q99677 370 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 FUNDC2Q9BWH2 189 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 OSBPL10Q9BXB5 764 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ELOVL6Q9H5J4 265 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 MOV10Q9HCE1 1003 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 MLXIPLQ9NP71 852 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 MS4A12Q9NXJ0 267 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 FBXL4Q9UKA2 621 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 ZNF346Q9UL40 294 aaKnown RBP5.36□□□□□ -1.55
VPS53-212ENST00000572259 TP53TG5Q9Y2B4 290 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 RNF115Q9Y4L5 304 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 HS3ST3B1Q9Y662 390 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 MYO18BQ8IUG5 2567 aa5.36□□□□□ -1.55
VPS53-212ENST00000572259 GOLGA8QA0A0J9YX86 632 aa5.35□□□□□ -1.55
VPS53-212ENST00000572259 TRBV11-1A0A0K0K1C0 115 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms