RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 LRFN4Q6PJG9 635 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 NHLRC1Q6VVB1 395 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 Q6YL49 198 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 SLC35D2Q76EJ3 337 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 REC114Q7Z4M0 266 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 IFT20Q8IY31 132 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 C1orf174Q8IYL3 243 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF101Q8IZC7 436 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 MUC20Q8N307 709 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 LRRC18Q8N456 261 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 POU5F2Q8N7G0 328 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 MNS1Q8NEH6 495 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 OR6S1Q8NH40 331 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 OR6X1Q8NH79 312 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 KLF14Q8TD94 323 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 EPS8L3Q8TE67 593 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 RAB40AQ8WXH6 277 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM54Q969K7 222 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 SLC35B4Q969S0 331 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF566Q969W8 418 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 SLC47A1Q96FL8 570 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 THOC1Q96FV9 657 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 MARS2Q96GW9 593 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 APOPT1Q96IL0 206 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 FAM71F1Q96KD3 344 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 MOGAT1Q96PD6 335 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ZIM3Q96PE6 472 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ARHGDIGQ99819 225 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 SSBP3Q9BWW4 388 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 KRTAP17-1Q9BYP8 105 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 OR2J1Q9GZK6 312 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 KCNN2Q9H2S1 579 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 PRDM13Q9H4Q3 707 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 MRPL39Q9NYK5 338 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 CGGBP1Q9UFW8 167 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 TLDC2A0PJX2 215 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 C5orf49A4QMS7 147 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 C5orf63A6NC05 138 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 RFXANKO14593 260 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 GPR137BO60478 399 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 SPAG7O75391 227 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 ANP32DO95626 131 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 MELTFP08582 738 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 WNT2P09544 360 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 RPS2P15880 293 aaKnown RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 LBPP18428 481 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 STOMP27105 288 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 HTR2AP28223 471 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 WNT5AP41221 380 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 GDI2P50395 445 aaKnown RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 LOXL3P58215 753 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 PROK1P58294 105 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 CLRN1P58418 232 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 RPL15P61313 204 aaKnown RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 NCALDP61601 193 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 UFM1P61960 85 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 PPP1CBP62140 327 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 LRRC74AQ0VAA2 488 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 MELKQ14680 651 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 MTX3Q5HYI7 312 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM255AQ5JRV8 349 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 VAX1Q5SQQ9 334 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 MBNL2Q5VZF2 373 aaKnown RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 RUSC1-AS1Q66K80 236 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 ZER1Q7Z7L7 766 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM86BQ8N661 226 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF283Q8N7M2 679 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 LSMEM1Q8N8F7 131 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 OR2Z1Q8NG97 314 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 OR5J2Q8NH18 312 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 ABHD4Q8TB40 342 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 TBC1D15Q8TC07 691 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 UBLCP1Q8WVY7 318 aaPredicted RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 SSMEM1Q8WWF3 244 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 DYRK2Q92630 601 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 SLC25A44Q96H78 314 aaPredicted RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 PLEKHA8Q96JA3 519 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 TEX37Q96LM6 180 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 SAMD8Q96LT4 415 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 ZBTB18Q99592 522 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 NUDT16L1Q9BRJ7 211 aaKnown RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 RASSF4Q9H2L5 321 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 PPCSQ9HAB8 311 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 GRPEL1Q9HAV7 217 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM27Q9HBJ8 222 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 CCNB1IP1Q9NPC3 277 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 THUMPD1Q9NXG2 353 aaKnown RBP6.13□□□□□ -1.43
VPS4A-203ENST00000564399 KIF17Q9P2E2 1029 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 KLHL21Q9UJP4 597 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 PPP1R3CQ9UQK1 317 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 POMT1Q9Y6A1 747 aa6.13□□□□□ -1.43
VPS4A-203ENST00000564399 KIR2DS1A0A191URI9 304 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 C5orf58C9J3I9 102 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 SURF4O15260 269 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 RNF13O43567 381 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF205O95201 554 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 IGHG1P01857 330 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 MMP7P09237 267 aaPredicted RBP6.12□□□□□ -1.43
VPS4A-203ENST00000564399 VSIG8P0DPA2 414 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms