RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NUDT13Q86X67 352 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SKA3Q8IX90 412 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ACOT4Q8N9L9 421 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 OR2L5Q8NG80 312 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 OR5T3Q8NGG3 340 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 OR4D11Q8NGI4 311 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 THAP6Q8TBB0 222 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SLC38A5Q8WUX1 472 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 THEM6Q8WUY1 208 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ART5Q96L15 291 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 GPA33Q99795 319 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TCEAL7Q9BRU2 100 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SLC6A16Q9GZN6 736 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SLC26A1Q9H2B4 701 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ISG20L2Q9H9L3 353 aaKnown RBP6.94□□□□□ -1.3
LIMA1-216ENST00000552909 MYNNQ9NPC7 610 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TRIM36Q9NQ86 728 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 C14orf105Q9NVL8 296 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 DCAF16Q9NXF7 216 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TRPC4Q9UBN4 977 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 MIOXQ9UGB7 285 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 A4GNTQ9UNA3 340 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SLC22A7Q9Y694 548 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TENM4Q6N022 2769 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TRBV23-1A0A0A0MS06 115 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 TTLL8A6PVC2 850 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ALOX12BO75342 701 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 STX11O75558 287 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 REM1O75628 298 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 SLC35G6P0C7Q6 338 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF888P0CJ79 500 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF35P13682 527 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 SNRPBP14678 240 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 MGMTP16455 207 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FBLP22087 321 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 HIST1H1TP22492 207 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 PTAFRP25105 342 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FOLR3P41439 243 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 MAPK14Q16539 360 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 GUCA2BQ16661 112 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 PRSS53Q2L4Q9 553 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 DEFB134Q4QY38 66 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FCRLBQ6BAA4 426 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FAM180BQ6P0A1 224 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ARL9Q6T311 187 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 APOOLQ6UXV4 268 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ESPNLQ6ZVH7 1005 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 PPP1R32Q7Z5V6 425 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 IZUMO1Q8IYV9 350 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 NT5CQ8TCD5 201 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 RXFP4Q8TDU9 374 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 SMAP2Q8WU79 429 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 MVB12AQ96EY5 273 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ABHD17AQ96GS6 310 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM19Q96HH6 336 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 JAM3Q9BX67 310 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 TEX12Q9BXU0 123 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 SLC38A1Q9H2H9 487 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 PLEKHA1Q9HB21 404 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 A4GALTQ9NPC4 353 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 MIEF1Q9NQG6 463 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF71Q9NQZ8 489 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ADAM29Q9UKF5 820 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ENTPD4Q9Y227 616 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 SIRT4Q9Y6E7 314 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 IGLV3-12A0A075B6K2 115 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 A0A0A6YYD5 115 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 RDH16O75452 317 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 NSA2O95478 260 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 IGHV2-70P01814 119 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 CD53P19397 219 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 PAICSP22234 425 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 UQCRC2P22695 453 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 HTR1FP30939 366 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 CCL11P51671 97 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 OC90Q02509 493 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 TGM3Q08188 693 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ECH1Q13011 328 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 CLEC12AQ5QGZ9 265 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 AADACL4Q5VUY2 407 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 KIRREL2Q6UWL6 708 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 RBMS3Q6XE24 437 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FAM122BQ7Z309 247 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 OR5M1Q8NGP8 315 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 OR5W2Q8NH69 310 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 C8orf44Q96CB5 159 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 MS4A4EQ96PG1 132 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 OR1F2PQ96R84 312 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF607Q96SK3 696 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 UTP23Q9BRU9 249 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ADAT1Q9BUB4 502 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 ALG8Q9BVK2 526 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 PAPOLGQ9BWT3 736 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FAM117AQ9C073 453 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 WDR54Q9H977 334 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 CACYBPQ9HB71 228 aaKnown RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 P4HTMQ9NXG6 502 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 H2AFY2Q9P0M6 372 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-216ENST00000552909 HS3ST3B1Q9Y662 390 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 FLNCQ14315 2725 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms