RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 NOXA1Q86UR1 476 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CADM4Q8NFZ8 388 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 OR7G1Q8NGA0 311 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 OR13C9Q8NGT0 318 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 FGGYQ96C11 551 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 S100A16Q96FQ6 103 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 SLC25A44Q96H78 314 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 WDFY2Q96P53 400 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 GINS4Q9BRT9 223 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF426Q9BUY5 554 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 DPAGT1Q9H3H5 408 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF160Q9HCG1 818 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 POLE3Q9NRF9 147 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CYSLTR2Q9NS75 346 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF69Q9UC07 566 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 PISDQ9UG56 409 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 OR5V1Q9UGF6 321 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 HIF3AQ9Y2N7 669 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 MMACHCQ9Y4U1 282 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 EML5Q05BV3 1969 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 PRSS37A4D1T9 235 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 VSTM2BA6NLU5 285 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 A8MVM7 634 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 HRGP04196 525 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 KLK3P07288 261 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 H2BFMP0C1H6 154 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 H2AFB2P0C5Z0 115 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ASAH2BP0C7U1 165 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 EPHA8P29322 1005 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 PTH2RP49190 550 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RPL27P61353 136 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 SF3A2Q15428 464 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 NR0B2Q15466 257 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LRRC37A5PQ49AS3 106 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 GLYATL3Q5SZD4 288 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 C11orf88Q6PI97 169 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LINC00114Q6XXX2 140 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 C17orf107Q6ZR85 190 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 LINC00299Q6ZSB3 139 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 SLC16A9Q7RTY1 509 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RNF144BQ7Z419 303 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RTN4RL2Q86UN3 420 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 CD163Q86VB7 1156 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF440Q8IYI8 595 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 PRSS35Q8N3Z0 413 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 OR6N1Q8NGY5 312 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 GFI1Q99684 422 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 DPCDQ9BVM2 203 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 RBM24Q9BX46 236 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 MRPL22Q9NWU5 206 aaKnown RBP5.03□□□□□ -1.6
LIMA1-215ENST00000552823 ING3Q9NXR8 418 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 WNT16Q9UBV4 365 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 DHDHQ9UQ10 334 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 TRAPPC4Q9Y296 219 aa5.03□□□□□ -1.6
LIMA1-215ENST00000552823 COL6A6A6NMZ7 2263 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ADAMTS9Q9P2N4 1935 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 IFITM5A6NNB3 132 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 FAM25EA8MYX2 175 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF814B7Z6K7 855 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ALG1L2C9J202 215 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ARPC3O15145 178 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 TSPAN2O60636 221 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 IGLV3-19P01714 112 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 BGLAPP02818 100 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 GTF2F2P13984 249 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ALOX5APP20292 161 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MNDAP41218 407 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 RAD52P43351 418 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 KIR3DL2P43630 455 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 POU3F4P49335 361 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 POLR2HP52434 150 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 RIDAP52758 137 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 IGLV3-21P80748 117 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ACY1Q03154 408 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 PUDPQ08623 228 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 POU4F2Q12837 409 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 EFR3AQ14156 821 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 PCGF3Q3KNV8 242 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 Q499Y3 187 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 CDONQ4KMG0 1287 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 PYHIN1Q6K0P9 492 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 SLC18B1Q6NT16 456 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 LYPD8Q6UX82 237 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 CPEB2Q7Z5Q1 589 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 NAA40Q86UY6 237 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 VASH2Q86V25 355 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ASCC1Q8N9N2 400 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 APCDD1LQ8NCL9 501 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 SLC26A10Q8NG04 563 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 OR4D10Q8NGI6 311 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 OR13C3Q8NGS6 347 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 OR56B4Q8NH76 319 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 GIMAP1Q8WWP7 306 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 DEDD2Q8WXF8 326 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 YIPF5Q969M3 257 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 SLC41A2Q96JW4 573 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 FAM210AQ96ND0 272 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 PELOQ9BRX2 385 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MED18Q9BUE0 208 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms