RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SPARCP09486 303 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 APEHP13798 732 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 DRD1P21728 446 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CAPZBP47756 277 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 HSD17B7P56937 341 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 MRPS21P82921 87 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 INSM1Q01101 510 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 DHODHQ02127 395 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 HLXQ14774 488 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 B3GNTL1Q67FW5 361 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 OR10K2Q6IF99 312 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ANKRD16Q6P6B7 361 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 TTLL10Q6ZVT0 673 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF440Q8IYI8 595 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF454Q8N9F8 522 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 GALNT11Q8NCW6 608 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 OTOSQ8NHW6 89 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CDCA3Q99618 268 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 UTP23Q9BRU9 249 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 REG4Q9BYZ8 158 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 FXYD6Q9H0Q3 95 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 GPN1Q9HCN4 374 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 LANCL2Q9NS86 450 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 PRODH2Q9UF12 536 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CGGBP1Q9UFW8 167 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 OPN4Q9UHM6 478 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ASCC3Q8N3C0 2202 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 RALGAPA1Q6GYQ0 2036 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 EXPH5Q8NEV8 1989 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CNTRLQ7Z7A1 2325 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 A0A1B0GTQ1 180 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM212A6NML5 194 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 LGALS8O00214 317 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 LMX1BO60663 402 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 BGLAPP02818 100 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 HIST1H2ABP04908 130 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 IL5P05113 134 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CTLA4P16410 223 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 IL11P20809 199 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CXCR1P25024 350 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 MECP2P51608 486 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 MAP2K6P52564 334 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 EPHA4P54764 986 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 RAP2BP61225 183 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 MRPS10P82664 201 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 RBMS2Q15434 407 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ARHGAP40Q5TG30 622 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 KIAA0895LQ68EN5 471 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 HIST3H2AQ7L7L0 130 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 WDFY1Q8IWB7 410 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 OR51A2Q8NGJ7 313 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF417Q8TAU3 575 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 METTL21AQ8WXB1 218 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 HIST1H2ACQ93077 130 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 FAM3DQ96BQ1 224 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 MRPL38Q96DV4 380 aaKnown RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 TCTN2Q96GX1 697 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 NPAS1Q99742 590 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 NUDT9Q9BW91 350 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 TPSD1Q9BZJ3 242 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 OR11A1Q9GZK7 315 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 ATG5Q9H1Y0 275 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 RABL2AQ9UBK7 228 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-213ENST00000552720 MMP17Q9ULZ9 603 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 RABL2BQ9UNT1 228 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 B9D1Q9UPM9 204 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 KCNMB2Q9Y691 235 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 EML6Q6ZMW3 1958 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 CEP192Q8TEP8 1941 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 TCRBV16S1A1N1A0A5B0 115 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SNRPGP15A8MWD9 76 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 C10orf142B7Z368 130 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 M0QYG6 137 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SLC16A7O60669 478 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 LDOC1O95751 146 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 NMBP08949 121 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 HLA-DOBP13765 273 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 M6PRP20645 277 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MNDAP41218 407 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 PPICP45877 212 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 NR0B1P51843 470 aaKnown RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SEC61A1P61619 476 aaKnown RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 EGR3Q06889 387 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SLC17A1Q14916 467 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ACKR1Q16570 336 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 VWA2Q5GFL6 755 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MYO7BQ6PIF6 2116 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 C16orf47Q6ZP98 133 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 TMUB2Q71RG4 321 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 NDUFAF7Q7L592 441 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 GPAT4Q86UL3 456 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 OR2AK2Q8NG84 335 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 OR1J4Q8NGS1 313 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ADIPOR1Q96A54 375 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 PNPLA2Q96AD5 504 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 KLHDC7BQ96G42 594 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 OR8B4Q96RC9 309 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MESP1Q9BRJ9 268 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 PTDSS2Q9BVG9 487 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MS4A7Q9GZW8 240 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms