RNA–Protein interactions for RNA: ENST00000548786.1

DDX54-205, Transcript of DEAD-box helicase 54, human

TSL 2

Gene DDX54, Length 498 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX54-205	ENST00000548786	NABP1	Q96AH0	204 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	RBP7	Q96R05	134 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	THTPA	Q9BU02	230 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	ALG12	Q9BV10	488 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	NDEL1	Q9GZM8	345 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	BARX1	Q9HBU1	254 aa	Predicted RBP	13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	CCNB1IP1	Q9NPC3	277 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	IL1RAP	Q9NPH3	570 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	KRCC1	Q9NPI7	259 aa	Predicted RBP	13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	TAS2R1	Q9NYW7	299 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	PMF1-BGLAP	U3KQ54	211 aa		13.64	□□□□□ -0.23
DDX54-205	ENST00000548786	TCRBV5S2	A0A599	114 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786		H7C417	338 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	IMPA2	O14732	288 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	ENTPD5	O75356	428 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	PTP4A3	O75365	173 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	PPP1R3D	O95685	299 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	SERPINA5	P05154	406 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	FAM157B	P0CG42	384 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	BMP4	P12644	408 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	NPR2	P20594	1047 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	NR4A1	P22736	598 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	FXYD6P3	P58550	94 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	HSF2	Q03933	536 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	KRR1	Q13601	381 aa	Known RBP	13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	TRIM25	Q14258	630 aa	Known RBP	13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	ETFDH	Q16134	617 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	SWI5	Q1ZZU3	235 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	ANKDD1A	Q495B1	522 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	THEM4	Q5T1C6	240 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	ZER1	Q7Z7L7	766 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	BIVM	Q86UB2	503 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	SLC30A7	Q8NEW0	376 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	AKR7L	Q8NHP1	331 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	SORCS2	Q96PQ0	1159 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	SIAE	Q9HAT2	523 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	SMURF2	Q9HAU4	748 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	TMCC3	Q9ULS5	477 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786	IER3IP1	Q9Y5U9	82 aa		13.63	□□□□□ -0.23
DDX54-205	ENST00000548786		B9A039	149 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	LY6G6D	O95868	133 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	NR2C1	P13056	603 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	ZNF35	P13682	527 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	CCNO	P22674	350 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	APEX1	P27695	318 aa	Known RBP	13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	LAP3	P28838	519 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	ZNF133	P52736	654 aa	Predicted RBP	13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	MRPS34	P82930	218 aa	Known RBP	13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	DBP	Q10586	325 aa	Predicted RBP	13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	CARTPT	Q16568	116 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	MSMP	Q1L6U9	139 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	PABPC1L2A	Q5JQF8	200 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	LCN8	Q6JVE9	175 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	SMARCD3	Q6STE5	483 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	FAM122B	Q7Z309	247 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	ARHGAP24	Q8N264	748 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	ZCCHC24	Q8N2G6	241 aa	Known RBP	13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	ICA1L	Q8NDH6	482 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	IL17RD	Q8NFM7	739 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	OR9Q2	Q8NGE9	314 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	LRGUK	Q96M69	825 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	SYT3	Q9BQG1	590 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	KCNN2	Q9H2S1	579 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	PLK3	Q9H4B4	646 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	CDH20	Q9HBT6	801 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	EMC7	Q9NPA0	242 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	PRPF19	Q9UMS4	504 aa	Known RBP	13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	TLN2	Q9Y4G6	2542 aa		13.62	□□□□□ -0.23
DDX54-205	ENST00000548786	C2CD3	Q4AC94	2353 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ZFHX3	Q15911	3703 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ARFGEF3	Q5TH69	2177 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	IGHV4-30-2	A0A087WSY4	118 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	SLC22A23	A1A5C7	686 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	TNFRSF11B	O00300	401 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	SCG5	P05408	212 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	MMP7	P09237	267 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ZNF32	P17041	273 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	SDHA	P31040	664 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ERF	P50548	548 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	PLP2	Q04941	152 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	MTX3	Q5HYI7	312 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	CLEC2A	Q6UVW9	174 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	PTCHD4	Q6ZW05	846 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	LRP11	Q86VZ4	500 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	CPEB3	Q8NE35	698 aa	Known RBP	13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	SAMD8	Q96LT4	415 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ERMAP	Q96PL5	475 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	REG4	Q9BYZ8	158 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	MRPL37	Q9BZE1	423 aa	Known RBP	13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	SYT4	Q9H2B2	425 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	ZNF442	Q9H7R0	627 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	DYNLRB1	Q9NP97	96 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	VNN3	Q9NY84	501 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	FBXL3	Q9UKT7	428 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	CMAHP	Q9Y471	501 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	SPEF1	Q9Y4P9	236 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786		U3KQV3	271 aa		13.61	□□□□□ -0.23
DDX54-205	ENST00000548786	IQCM	A0A1B0GVH7	501 aa		13.6	□□□□□ -0.23
DDX54-205	ENST00000548786	PRSS37	A4D1T9	235 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms