RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CD207Q9UJ71 328 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 PCNX3Q9H6A9 2034 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 C11orf98E9PRG8 122 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 SIX6O95475 246 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 PROS1P07225 676 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 CSF2RBP32927 897 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 OC90Q02509 493 aaPredicted RBP17.38■□□□□ 0.37
VPS28-213ENST00000530983 ZMYND11Q15326 602 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 MEP1BQ16820 701 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 SFRP5Q5T4F7 317 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 OR52H1Q8NGJ2 320 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 OR6N1Q8NGY5 312 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 FBXW5Q969U6 566 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 PNPLA2Q96AD5 504 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 CXorf58Q96LI9 332 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 MYO15AQ9UKN7 3530 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 IGHV5-51A0A0C4DH38 117 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 MEIS3P1A6NDR6 274 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 FRG2CA6NGY1 282 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 H0YIG0 161 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 SNAPC5O75971 98 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 RLN1P04808 185 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 POU3F2P20265 443 aaPredicted RBP17.38■□□□□ 0.37
VPS28-213ENST00000530983 GFERP55789 205 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 UBE2MP61081 183 aaKnown RBP17.38■□□□□ 0.37
VPS28-213ENST00000530983 SEC61A1P61619 476 aaKnown RBP17.38■□□□□ 0.37
VPS28-213ENST00000530983 CHRDL2Q6WN34 429 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 FAM160A2Q8N612 972 aaPredicted RBP17.38■□□□□ 0.37
VPS28-213ENST00000530983 ADIPOR1Q96A54 375 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 SOHLH2Q9NX45 425 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 SLC22A13Q9Y226 551 aa17.38■□□□□ 0.37
VPS28-213ENST00000530983 TRAV18A0A075B6X5 111 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 UBE2QL1A1L167 161 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 HCRTR2O43614 444 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 RAD1O60671 282 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 PNPP00491 289 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 RORAP35398 523 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 BLKP51451 505 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 ZNF273Q14593 569 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 SLC17A1Q14916 467 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 C2orf76Q3KRA6 126 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 RGS7BPQ6MZT1 257 aaPredicted RBP17.37■□□□□ 0.37
VPS28-213ENST00000530983 CFAP77Q6ZQR2 320 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 TMEM151BQ8IW70 566 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 OR51S1Q8NGJ8 323 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 TSLPQ969D9 159 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 PPP1R14AQ96A00 147 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 FAM3DQ96BQ1 224 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 NKX3-1Q99801 234 aaPredicted RBP17.37■□□□□ 0.37
VPS28-213ENST00000530983 CPAMD8Q8IZJ3 1885 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 XKRYO14609 159 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 PLGP00747 810 aaPredicted RBP17.37■□□□□ 0.37
VPS28-213ENST00000530983 HLA-DQA2P01906 255 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 IGKV3-11P04433 115 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 GTF2F2P13984 249 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 CXCR1P25024 350 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 FASLGP48023 281 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 SLC6A8P48029 635 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 HLXQ14774 488 aaPredicted RBP17.37■□□□□ 0.37
VPS28-213ENST00000530983 MUC20Q8N307 709 aaPredicted RBP17.37■□□□□ 0.37
VPS28-213ENST00000530983 KLHDC7BQ96G42 594 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 GAL3ST4Q96RP7 486 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 NRSN2Q9GZP1 204 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 CDV3Q9UKY7 258 aaKnown RBP17.37■□□□□ 0.37
VPS28-213ENST00000530983 B9D1Q9UPM9 204 aa17.37■□□□□ 0.37
VPS28-213ENST00000530983 CDC14CA4D256 554 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 SLC17A2O00624 439 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 ARPC5O15511 151 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 FCER2P06734 321 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 AKAIN1P0CW23 69 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 ZNF35P13682 527 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 PRKACAP17612 351 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 S100A11P31949 105 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 RAB11BQ15907 218 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 TEX30Q5JUR7 227 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 FAM166AQ6J272 317 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 TFAP2EQ6VUC0 442 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 ZNF679Q8IYX0 411 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 OR2AK2Q8NG84 335 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 TGM7Q96PF1 710 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 TRAV36DV7A0A075B6V5 113 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 LOC100289279A0A1B0GTE1 492 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 SLC22A23A1A5C7 686 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 FITM1A5D6W6 292 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 HMSDA8MTL9 139 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 CDC40O60508 579 aaKnown RBP eCLIP17.36■□□□□ 0.37
VPS28-213ENST00000530983 DDAH2O95865 285 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 IGLV3-19P01714 112 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 CD3DP04234 171 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 BIKQ13323 160 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 ACKR1Q16570 336 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 DCAF12L2Q5VW00 463 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 OR7E24Q6IFN5 339 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.36■□□□□ 0.37
VPS28-213ENST00000530983 MARCH3Q86UD3 253 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 PLPP7Q8NBV4 271 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 CLEC1AQ8NC01 280 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 RNF128Q8TEB7 428 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 ZNF721Q8TF20 911 aa17.36■□□□□ 0.37
VPS28-213ENST00000530983 METTL21AQ8WXB1 218 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms