RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PLSCR4Q9NRQ2 329 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 PLCXD1Q9NUJ7 323 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 CLN6Q9NWW5 311 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 ZNF226Q9NYT6 803 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 VSX1Q9NZR4 365 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 KLHL13Q9P2N7 655 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 CLCF1Q9UBD9 225 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 FBLN5Q9UBX5 448 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 MOKQ9UQ07 419 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 RCE1Q9Y256 329 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 ADAM18Q9Y3Q7 739 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 FLVCR1Q9Y5Y0 555 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 SPTBN1Q01082 2364 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 MAST4O15021 2626 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 IGHV3-15A0A0B4J1V0 119 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SLC22A23A1A5C7 686 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 PRSS37A4D1T9 235 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 OR6C68A6NDL8 312 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 PRR23D1E9PI22 279 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 E9PLN8 166 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ARHGEF9O43307 516 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 PRKYO43930 277 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SS18L1O75177 396 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 MRPL33O75394 65 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 TRMUO75648 421 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 CNOT4O95628 575 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 RENP00797 406 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TPOP07202 933 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 GNAO1P09471 354 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 PRR23D2P0DMB1 279 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 ZNF3P17036 446 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 KLK2P20151 261 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 CRABP1P29762 137 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 CEACAM8P31997 349 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 BLVRAP53004 296 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SLC25A1P53007 311 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 CASP6P55212 293 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 BIDP55957 195 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 CLDN17P56750 224 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SUMO1P63165 101 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-228ENST00000528455 LGALS3BPQ08380 585 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TOP3AQ13472 1001 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 MAD2L1BPQ15013 274 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 STK11Q15831 433 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 C3AR1Q16581 482 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ACSF3Q4G176 576 aaPredicted RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 KLHL22Q53GT1 634 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SLC35D3Q5M8T2 416 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 C6orf141Q5SZD1 244 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 C1orf185Q5T7R7 199 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 RIPPLY2Q5TAB7 128 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 AADACL4Q5VUY2 407 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 NXNL2Q5VZ03 156 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 B3GNT6Q6ZMB0 384 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 AAED1Q7RTV5 226 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 P4HA3Q7Z4N8 544 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ZBTB46Q86UZ6 589 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 IGFN1Q86VF2 1251 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 CPOQ8IVL8 374 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TUSC5Q8IXB3 177 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ENTHD1Q8IYW4 607 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SLC37A3Q8NCC5 494 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 OR4K13Q8NH42 304 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 FAM81AQ8TBF8 368 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ABHD3Q8WU67 409 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TMEM54Q969K7 222 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ZNF566Q969W8 418 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 DOCK7Q96N67 2140 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ZNF385AQ96PM9 386 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 TSPAN32Q96QS1 320 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 NMNAT3Q96T66 252 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TEAD3Q99594 435 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 VKORC1Q9BQB6 163 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TTYH2Q9BSA4 534 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 ALG12Q9BV10 488 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 EMC6Q9BV81 110 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 LINC00470Q9BZP3 86 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 NMNAT2Q9BZQ4 307 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 MRPS18AQ9NVS2 196 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 HAO2Q9NYQ3 351 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-228ENST00000528455 B9D1Q9UPM9 204 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 RNF6Q9Y252 685 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 LRCH1Q9Y2L9 728 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 NOSIPQ9Y314 301 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 FKBP7Q9Y680 259 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 SPTAN1Q13813 2472 aaKnown RBP6.54□□□□□ -1.36
CD44-228ENST00000528455 NAV2Q8IVL1 2488 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 HIVEP3Q5T1R4 2406 aa6.54□□□□□ -1.36
CD44-228ENST00000528455 TEX13CA0A0J9YWL9 993 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 HSPB2A8KAH6 182 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 KDM4EB2RXH2 506 aaPredicted RBP6.53□□□□□ -1.36
CD44-228ENST00000528455 RPL36A-HNRNPH2H7BZ11 118 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 ZNHIT1O43257 154 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 SLC43A1O75387 559 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 SLC2A10O95528 541 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 CLIC3O95833 236 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 IL18BPO95998 194 aa6.53□□□□□ -1.36
CD44-228ENST00000528455 PLGP00747 810 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms