RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PAIP2Q9BPZ3 127 aaKnown RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 MRI1Q9BV20 369 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 TMEM109Q9BVC6 243 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 MS4A7Q9GZW8 240 aaPredicted RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 SDR39U1Q9NRG7 319 aaPredicted RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 EGFL7Q9UHF1 273 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 TRIM33Q9UPN9 1127 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 SOX21Q9Y651 276 aaPredicted RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 IGHV3OR16-10A0A075B7F0 116 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 RGS16O15492 202 aaPredicted RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 GPANK1O95872 356 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 IGHG1P01857 330 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 STOMP27105 288 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 PCGF2P35227 344 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 ZNF84P51523 738 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 VSNL1P62760 191 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 SRSF4Q08170 494 aaKnown RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 KRT71Q3SY84 523 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 HHATQ5VTY9 493 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 MBNL2Q5VZF2 373 aaKnown RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 LINC00114Q6XXX2 140 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 SPATC1Q76KD6 591 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 RANBP3LQ86VV4 465 aaPredicted RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 SPICQ8N5J4 248 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 GOLGA6L1Q8N7Z2 621 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 HIPK4Q8NE63 616 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 TMIGD2Q96BF3 282 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 MAELQ96JY0 434 aaKnown RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 MCHR1Q99705 422 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 OR2J1Q9GZK6 312 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 PATZ1Q9HBE1 687 aaKnown RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 KCNK9Q9NPC2 374 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 NANSQ9NR45 359 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 CYSLTR2Q9NS75 346 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 SLC25A37Q9NYZ2 338 aa11.77□□□□□ -0.53
VARS-227ENST00000489979 EIF3KQ9UBQ5 218 aaKnown RBP11.77□□□□□ -0.53
VARS-227ENST00000489979 C5orf49A4QMS7 147 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 PRORSD1PA6NEY8 169 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 CD55P08174 381 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 ADH4P08319 380 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 IGHV4-38-2P0DP08 117 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 AQP1P29972 269 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 LIPAP38571 399 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 MTNR1AP48039 350 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 SLC6A9P48067 706 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 HIST3H3Q16695 136 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 ZNF613Q6PF04 617 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 C16orf87Q6PH81 154 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 MSRB3Q8IXL7 192 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 KLHL36Q8N4N3 616 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 BHLHE22Q8NFJ8 381 aaPredicted RBP11.76□□□□□ -0.53
VARS-227ENST00000489979 KLF14Q8TD94 323 aaPredicted RBP11.76□□□□□ -0.53
VARS-227ENST00000489979 POM121L2Q96KW2 1035 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 ZNF607Q96SK3 696 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 DIRC2Q96SL1 478 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 KCNN2Q9H2S1 579 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 MSL2Q9HCI7 577 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 CCNB1IP1Q9NPC3 277 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 TMEM106BQ9NUM4 274 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 KLHL21Q9UJP4 597 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 ZDHHC8Q9ULC8 765 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 MMP24Q9Y5R2 645 aa11.76□□□□□ -0.53
VARS-227ENST00000489979 LOC100509620A0A075B734 347 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 A8MXK9 166 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 M0R3H8 397 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 KPNA4O00629 521 aaPredicted RBP11.75□□□□□ -0.53
VARS-227ENST00000489979 UBDO15205 165 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 CHP2O43745 196 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 HIST1H2ABP04908 130 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 ZNF32P17041 273 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 SLC6A2P23975 617 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 CDAP32320 146 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 GDI2P50395 445 aaKnown RBP11.75□□□□□ -0.53
VARS-227ENST00000489979 TNFAIP6P98066 277 aaPredicted RBP11.75□□□□□ -0.53
VARS-227ENST00000489979 PAX8Q06710 450 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 SCARB2Q14108 478 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 TMEM155Q4W5P6 130 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 RFPL4BQ6ZWI9 263 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 HIST3H2AQ7L7L0 130 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 ARMC8Q8IUR7 673 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 PARP8Q8N3A8 854 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 SMYD1Q8NB12 490 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 NOXO1Q8NFA2 376 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 OR52E2Q8NGJ4 325 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 AKR7LQ8NHP1 331 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 ABHD4Q8TB40 342 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 AENQ8WTP8 325 aaKnown RBP11.75□□□□□ -0.53
VARS-227ENST00000489979 HIST1H2ACQ93077 130 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 OR52B2Q96RD2 323 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 MRPL13Q9BYD1 178 aaKnown RBP11.75□□□□□ -0.53
VARS-227ENST00000489979 SIAEQ9HAT2 523 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 SLCO1B3Q9NPD5 702 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 THAP1Q9NVV9 213 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 PDP1Q9P0J1 537 aaPredicted RBP11.75□□□□□ -0.53
VARS-227ENST00000489979 SLAMF8Q9P0V8 285 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 ARMCX1Q9P291 453 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 ZNF229Q9UJW7 825 aa11.75□□□□□ -0.53
VARS-227ENST00000489979 DOCK11Q5JSL3 2073 aa11.74□□□□□ -0.53
VARS-227ENST00000489979 MDFIC2A0A1B0GVS7 189 aa11.74□□□□□ -0.53
VARS-227ENST00000489979 CPSF4LA6NMK7 179 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms