RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 DLK1P80370 383 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 MRPS34P82930 218 aaKnown RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 GAB1Q13480 694 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 EXOSC2Q13868 293 aaKnown RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 EFNB3Q15768 340 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 PHKG1Q16816 387 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 LY6G6FQ5SQ64 297 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 TEPPQ6URK8 271 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 THOC6Q86W42 341 aaKnown RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 CPNE9Q8IYJ1 553 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 CA13Q8N1Q1 262 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF611Q8N823 705 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 PPFIBP2Q8ND30 876 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 NR4A3Q92570 626 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 GTF3AQ92664 365 aaKnown RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 CTHRC1Q96CG8 243 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 MTERF3Q96E29 417 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 PELI1Q96FA3 418 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 RMND5BQ96G75 393 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 SH3YL1Q96HL8 342 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 ATOH8Q96SQ7 321 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 SEC22CQ9BRL7 303 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 MAP1LC3CQ9BXW4 147 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 DGCR6LQ9BY27 220 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 C6orf62Q9GZU0 229 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 NMRAL1Q9HBL8 299 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 TMED7Q9Y3B3 224 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 MRPS18CQ9Y3D5 142 aaKnown RBP4.7□□□□□ -1.66
CCDC39-205ENST00000485055 BAHCC1Q9P281 2608 aa4.7□□□□□ -1.66
CCDC39-205ENST00000485055 PHF3Q92576 2039 aaKnown RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 TENM4Q6N022 2769 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NSG1A0A0A6YYJ2 146 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NPIPA5A0A0B4J1W7 369 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 A0A1W2PQL4 384 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 LRIT2A6NDA9 550 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ZAR1LA6NP61 321 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NPIPA5E9PKD4 350 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NPIPA3F8WFD2 350 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 CTNSO60931 367 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SUPT3HO75486 399 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 GLSO94925 669 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 OCMP0CE72 109 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 DCKP27707 260 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 KDELR2P33947 212 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ERVS71-1P61550 626 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ADARB1P78563 741 aaKnown RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 PITPNAQ00169 270 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SLC3A1Q07837 685 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 TSC22D1Q15714 1073 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SYPL1Q16563 259 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 WHAMMP3Q1A5X7 153 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 TMEM249Q2WGJ8 235 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 FAM182AQ5T1J6 154 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 IRAK1BP1Q5VVH5 260 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 PIWIL4Q7Z3Z4 852 aaKnown RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 GID4Q8IVV7 300 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 GATSQ8NAP1 163 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 OR2L5Q8NG80 312 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 OR4C5Q8NGB2 326 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 LZICQ8WZA0 190 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 MOAP1Q96BY2 351 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 MS4A6EQ96DS6 147 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF597Q96LX8 424 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 GPR78Q96P69 363 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF251Q9BRH9 671 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 TMEM79Q9BSE2 394 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 DPCDQ9BVM2 203 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 METTL9Q9H1A3 318 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 PRDM7Q9NQW5 492 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NECAP2Q9NVZ3 263 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NPIPA1Q9UND3 350 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 NTNG1Q9Y2I2 539 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 MYO18BQ8IUG5 2567 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ARHGAP21Q5T5U3 1957 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 HCFC1P51610 2035 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 FAM95CA0A1B0GW59 222 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 RNF222A6NCQ9 220 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 OR2AT4A6NND4 320 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 H3BS24 57 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 HSPA12AO43301 675 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SERPIND1P05546 499 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 GYPEP15421 78 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 EFNA1P20827 205 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SPRP35270 261 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 RAB4BP61018 213 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ADAM8P78325 824 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SELENBP1Q13228 472 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 C1orf146Q5VVC0 180 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 XKRXQ6PP77 449 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 C20orf204Q6ZNR8 217 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 DPPA2Q7Z7J5 298 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF100Q8IYN0 542 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ZFP62Q8NB50 900 aaPredicted RBP4.69□□□□□ -1.66
CCDC39-205ENST00000485055 SMPDL3BQ92485 455 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 AP3S1Q92572 193 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 GPR137Q96N19 417 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 OR5B2Q96R09 309 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 TNFRSF13CQ96RJ3 184 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 ULBP2Q9BZM5 246 aa4.69□□□□□ -1.66
CCDC39-205ENST00000485055 TRIM15Q9C019 465 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms