RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TPST1O60507 370 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 STX11O75558 287 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 NXPH4O95158 308 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TNFAIP8O95379 198 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TSPAN12O95859 305 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CAPN1P07384 714 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 OR9G9P0C7N8 305 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PABPC4LP0CB38 370 aaKnown RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 ETS2P15036 469 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 NCK1P16333 377 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 SELEP16581 610 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF26P17031 533 aaPredicted RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF7P17097 686 aaPredicted RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 PSMC3P17980 439 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 HMOX2P30519 316 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CA5AP35218 305 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 RPL5P46777 297 aaKnown RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 GSK3BP49841 420 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 POLR2JP52435 117 aaKnown RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 DIO3P55073 304 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 AP1S1P61966 158 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 NTHL1P78549 312 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PLOD1Q02809 727 aaPredicted RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 LIPEQ05469 1076 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 BCL2L1Q07817 233 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 BNIP2Q12982 314 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TMEM187Q14656 261 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 RAB35Q15286 201 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TGFBIQ15582 683 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CYP51A1Q16850 503 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 DEFB115Q30KQ5 88 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF876PQ49A33 203 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ATP6AP1LQ52LC2 224 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 XKR7Q5GH72 579 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 COQ5Q5HYK3 327 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PAGE3Q5JUK9 113 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ADAMTSL4-AS1Q5T5F5 129 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 LCE3AQ5TA76 89 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 SLX4IPQ5VYV7 408 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TPGS2Q68CL5 300 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 LCN8Q6JVE9 175 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 KCNIP4Q6PIL6 250 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 APOOLQ6UXV4 268 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CERS6Q6ZMG9 384 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 LANCL3Q6ZV70 420 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 SERPINA9Q86WD7 417 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 NLRC5Q86WI3 1866 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CCDC71Q8IV32 467 aaPredicted RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 SLC39A11Q8N1S5 342 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 STK40Q8N2I9 435 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 METTL4Q8N3J2 472 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 DCAF4L2Q8NA75 395 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 FNDC5Q8NAU1 212 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 OR4F6Q8NGB9 312 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 AKR7LQ8NHP1 331 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF461Q8TAF7 563 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 WFDC5Q8TCV5 224 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 LKAAEAR1Q8TD35 194 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 DDI1Q8WTU0 396 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CANT1Q8WVQ1 401 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 BIRC7Q96CA5 298 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TEX37Q96LM6 180 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF597Q96LX8 424 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 AGAP4Q96P64 663 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF382Q96SR6 550 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 SLC29A1Q99808 456 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CIB1Q99828 191 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 KCTD14Q9BQ13 255 aaPredicted RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 TTYH2Q9BSA4 534 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 FEM1AQ9BSK4 669 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 OSBPL11Q9BXB4 747 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 SPATA16Q9BXB7 569 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PKIBQ9C010 78 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 STRADBQ9C0K7 418 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ASB8Q9H765 288 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ESM1Q9NQ30 184 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 DEPPQ9NTK1 212 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 AIG1Q9NVV5 245 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 IL17CQ9P0M4 197 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 NYNRINQ9P2P1 1898 aaKnown RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 GNG12Q9UBI6 72 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ABCD2Q9UBJ2 740 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 SUN2Q9UH99 717 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CIDEBQ9UHD4 219 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CRLS1Q9UJA2 301 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 GNPTGQ9UJJ9 305 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PCTPQ9UKL6 214 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 RPH3ALQ9UNE2 315 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CPQQ9Y646 472 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PRSS21Q9Y6M0 314 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 V9GYQ6 96 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PLXNA3P51805 1871 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TRPM7Q96QT4 1865 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 TRAV26-1A0A087WT03 109 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 GLYATL1P3A0A0U1RQE8 302 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 C1orf232A0A0U1RR37 186 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 SMIM31A0A1B0GVY4 71 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 C11orf98E9PRG8 122 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 H0YJX3 145 aa3.39□□□□□ -1.87
VPS29-202ENST00000447578 H3BNH8 94 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms