RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 KLF14Q8TD94 323 aaPredicted RBP12.11□□□□□ -0.47
HMGN1-208ENST00000443046 GEMIN6Q8WXD5 167 aaKnown RBP12.11□□□□□ -0.47
HMGN1-208ENST00000443046 GTF2H4Q92759 462 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 MCHR2Q969V1 340 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 DIRC2Q96SL1 478 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 MRPL13Q9BYD1 178 aaKnown RBP12.11□□□□□ -0.47
HMGN1-208ENST00000443046 PAIP1Q9H074 479 aaKnown RBP12.11□□□□□ -0.47
HMGN1-208ENST00000443046 WDR55Q9H6Y2 383 aaPredicted RBP12.11□□□□□ -0.47
HMGN1-208ENST00000443046 RMND5AQ9H871 391 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 TMEM27Q9HBJ8 222 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 TMEM106BQ9NUM4 274 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 SELENONQ9NZV5 590 aa12.11□□□□□ -0.47
HMGN1-208ENST00000443046 CGGBP1Q9UFW8 167 aaPredicted RBP12.11□□□□□ -0.47
HMGN1-208ENST00000443046 DOCK11Q5JSL3 2073 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 LOC100509620A0A075B734 347 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 CLIC1O00299 241 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 KNG1P01042 644 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 BGNP21810 368 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 STOMP27105 288 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 APLNRP35414 380 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 RBMXP38159 391 aaKnown RBP12.1□□□□□ -0.47
HMGN1-208ENST00000443046 RELBQ01201 579 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 MELKQ14680 651 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 ZMYND11Q15326 602 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 ZNF74Q16587 644 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 PABPC1L2AQ5JQF8 200 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 SPATA46Q5T0L3 261 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 SPATC1Q76KD6 591 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 C1orf174Q8IYL3 243 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 C10orf111Q8N326 155 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 PARP8Q8N3A8 854 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 KLHL36Q8N4N3 616 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 C10orf53Q8N6V4 93 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 SLC25A40Q8TBP6 338 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 DACT3Q96B18 629 aaPredicted RBP12.1□□□□□ -0.47
HMGN1-208ENST00000443046 UPRTQ96BW1 309 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 PKP2Q99959 881 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 SPATA5L1Q9BVQ7 753 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 OR2J1Q9GZK6 312 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 RAD21L1Q9H4I0 556 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 BEX1Q9HBH7 125 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 SDR39U1Q9NRG7 319 aaPredicted RBP12.1□□□□□ -0.47
HMGN1-208ENST00000443046 ZIM2Q9NZV7 527 aa12.1□□□□□ -0.47
HMGN1-208ENST00000443046 DNAH3Q8TD57 4116 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 FAM181BA6NEQ2 426 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 C5orf58C9J3I9 102 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 H3BSA7 217 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 PCGF2P35227 344 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 BST1Q10588 318 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 STX3Q13277 289 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 CDK5R2Q13319 367 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 C10orf128Q5T292 105 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 REEP3Q6NUK4 255 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 JAZF1Q86VZ6 243 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 KIR3DL3Q8N743 410 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 NFKBIDQ8NI38 313 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 MAELQ96JY0 434 aaKnown RBP12.09□□□□□ -0.47
HMGN1-208ENST00000443046 SIGLEC11Q96RL6 698 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 DCLRE1CQ96SD1 692 aaKnown RBP12.09□□□□□ -0.47
HMGN1-208ENST00000443046 ARHGDIGQ99819 225 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 TMEM109Q9BVC6 243 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 SIAEQ9HAT2 523 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 SSU72Q9NP77 194 aaKnown RBP12.09□□□□□ -0.47
HMGN1-208ENST00000443046 SLC25A37Q9NYZ2 338 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 IL20RAQ9UHF4 553 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 GMEB1Q9Y692 573 aa12.09□□□□□ -0.47
HMGN1-208ENST00000443046 MDFIC2A0A1B0GVS7 189 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 CENPBD1B2RD01 187 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 M0QZ24 198 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 HDAC3O15379 428 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 HOXA3O43365 443 aaPredicted RBP12.08□□□□□ -0.48
HMGN1-208ENST00000443046 FMO6PO60774 539 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 NDUFA7O95182 113 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 OR6A2O95222 327 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 LYPD3O95274 346 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 GPANK1O95872 356 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 IGHG1P01857 330 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 ASAH2BP0C7U1 165 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 CCNOP22674 350 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 POLR2JP52435 117 aaKnown RBP12.08□□□□□ -0.48
HMGN1-208ENST00000443046 RGS8P57771 180 aaPredicted RBP12.08□□□□□ -0.48
HMGN1-208ENST00000443046 KRTAP10-3P60369 221 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 NCALDP61601 193 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 BTG1P62324 171 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 MRPS34P82930 218 aaKnown RBP12.08□□□□□ -0.48
HMGN1-208ENST00000443046 IFFO1Q0D2I5 559 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 MPP2Q14168 576 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 C6orf10Q5SRN2 563 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 HHATQ5VTY9 493 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 OLFML2AQ68BL7 652 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 ASPHD2Q6ICH7 369 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 ZNF774Q6NX45 483 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 ZNF613Q6PF04 617 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 C17orf107Q6ZR85 190 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 RFPL4BQ6ZWI9 263 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 KRT73Q86Y46 540 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 MSRB3Q8IXL7 192 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 LRRC18Q8N456 261 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 OR9I1Q8NGQ6 314 aa12.08□□□□□ -0.48
HMGN1-208ENST00000443046 NABP1Q96AH0 204 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms