RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 HIST1H2AHQ96KK5 128 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RHBDD3Q9Y3P4 386 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 A0A0D9SEW6 157 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 UPK1AO00322 258 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PRR35P0CG20 571 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 C5AR1P21730 350 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ACHEP22303 614 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ADRA1BP35368 520 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SOX4Q06945 474 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MEX3BQ6ZN04 569 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR6M1Q8NGM8 313 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TSSK6Q9BXA6 273 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 GLRX2Q9NS18 164 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CKLFQ9UBR5 152 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 NOP16Q9Y3C1 178 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 H7C417 338 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 JTBO76095 146 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 DIRAS3O95661 229 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF573Q86YE8 665 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR4K14Q8NGD5 310 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 GPR148Q8TDV2 347 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SLAMF9Q96A28 289 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SLC2A4RGQ9NR83 387 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 XKRY2A2RUG3 117 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 LEUTXA8MZ59 168 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FGF18O76093 207 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CNIH1O95406 144 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 NTSR2O95665 410 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 C8GP07360 202 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 DCTP40126 519 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 HTR6P50406 440 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 GAB1Q13480 694 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MPZL3Q6UWV2 235 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 HORMAD2Q8N7B1 307 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 AGO3Q9H9G7 860 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 A0A1B0GW15 77 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ELOA3DA6NLF2 546 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ICAM2P13598 275 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ST6GAL1P15907 406 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MAS1LP35410 378 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 BDKRB1P46663 353 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CX3CR1P49238 355 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SRPXP78539 464 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TAF1AQ15573 450 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PAAF1Q9BRP4 392 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SERPINE3A8MV23 424 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RCBTB2O95199 551 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RPS25P62851 125 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TGIF1Q15583 401 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 NNATQ16517 81 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 AANATQ16613 207 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 C10orf91Q5T1B1 145 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TSACCQ96A04 125 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FAM122AQ96E09 287 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CARHSP1Q9Y2V2 147 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 COL4A4P53420 1690 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 LRIT2A6NDA9 550 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR2B8PP59922 312 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MARC1Q5VT66 337 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 UMODL1-AS1Q8N2C9 162 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SLC30A3Q99726 388 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SEC61A2Q9H9S3 476 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 DMRT1Q9Y5R6 373 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 MDFIC2A0A1B0GVS7 189 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RNASET2O00584 256 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FGF7P21781 194 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CRABP1P29762 137 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RPS27P42677 84 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 CXCL17Q6UXB2 119 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR4K13Q8NH42 304 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM159Q96B96 161 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ADARB2Q9NS39 739 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM184BQ9Y519 407 aaPredicted RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 B4DXG7 233 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 IL11P20809 199 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 GLRA1P23415 457 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PKIAP61925 76 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SP6Q3SY56 376 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ANGPTL5Q86XS5 388 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR9Q2Q8NGE9 314 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RNF141Q8WVD5 230 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FCAMRQ8WWV6 532 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ST8SIA4Q92187 359 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF558Q96NG5 402 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SLC27A6Q9Y2P4 619 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 RCL1Q9Y2P8 373 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FAM74A7A6NL05 159 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 PDYNP01213 254 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM220Q6QAJ8 160 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OR2A14Q96R47 310 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 SLC35A5Q9BS91 424 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 POLDIP3Q9BY77 421 aaKnown RBP3.26□□□□□ -1.89
SYNE1-201ENST00000341594 EGLN1Q9GZT9 426 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 ATG5Q9H1Y0 275 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 OSGIN2Q9Y236 505 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FAAHO00519 579 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 AK1P00568 194 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FAM27D1Q5T7N8 215 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 LGI4Q8N135 537 aa3.26□□□□□ -1.89
SYNE1-201ENST00000341594 FAM58AQ8N1B3 248 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms