RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PDLIM3Q53GG5 364 aaPredicted RBP12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 ARMCX4Q5H9R4 360 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 MBNL2Q5VZF2 373 aaKnown RBP12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 NANOGNBQ7Z5D8 188 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 C10orf111Q8N326 155 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 LRRC17Q8N6Y2 441 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 C11orf65Q8NCR3 313 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 NOXO1Q8NFA2 376 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 MCHR2Q969V1 340 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 SPDL1Q96EA4 605 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 ARHGDIGQ99819 225 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 CCNB1IP1Q9NPC3 277 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 UBAP1Q9NZ09 502 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 VAPAQ9P0L0 249 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 NUP50Q9UKX7 468 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 CACNG2Q9Y698 323 aa12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 V9GYY5 206 aaPredicted RBP12.53□□□□□ -0.4
CCDC88B-201ENST00000301897 TRBV5-3A0A0A0MS03 114 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 TRAPPC13A5PLN9 417 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 GMNCA6NCL1 334 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 POLR3GO15318 223 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SPRY3O43610 288 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 UBOX5O94941 541 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 TGDSO95455 350 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 IGHV1-46P01743 117 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 MMP7P09237 267 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 ASAH2BP0C7U1 165 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 UMPSP11172 480 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 MAKP20794 623 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 STOMP27105 288 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 AQP1P29972 269 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 DAP3P51398 398 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 MMP15P51511 669 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 MRPS34P82930 218 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 GLO1Q04760 184 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 PABPC1L2AQ5JQF8 200 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 ENTPD8Q5MY95 495 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 C10orf128Q5T292 105 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 EPGNQ6UW88 154 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 ZER1Q7Z7L7 766 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 FUNDC1Q8IVP5 155 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 LRRC18Q8N456 261 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SPICQ8N5J4 248 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SIGLECL1Q8N7X8 197 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 ADAMTS16Q8TE57 1224 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 C22orf15Q8WYQ4 148 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC25A28Q96A46 364 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 ZBTB9Q96C00 473 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 MARS2Q96GW9 593 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SEPHS2Q99611 448 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 WFDC6Q9BQY6 131 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 MRPL13Q9BYD1 178 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SMURF2Q9HAU4 748 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 PLEK2Q9NYT0 353 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 SLAMF8Q9P0V8 285 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 PURGQ9UJV8 347 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 RAB21Q9UL25 225 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 POLR3KQ9Y2Y1 108 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 USH1CQ9Y6N9 552 aa12.52□□□□□ -0.41
CCDC88B-201ENST00000301897 VWFP04275 2813 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 CPSF4LA6NMK7 179 aaKnown RBP12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 M0R3H8 397 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 CD55P08174 381 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 CCNOP22674 350 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 GDI2P50395 445 aaKnown RBP12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF133P52736 654 aaPredicted RBP12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 PCBP3P57721 371 aaKnown RBP12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 NPTX1Q15818 432 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 TREML4Q6UXN2 200 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 SLC30A8Q8IWU4 369 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 ALDH16A1Q8IZ83 802 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 SMYD1Q8NB12 490 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 OR6T1Q8NGN1 323 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 IPCEF1Q8WWN9 437 aaPredicted RBP12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 GTF3AQ92664 365 aaKnown RBP12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 LRRC58Q96CX6 371 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 POM121L2Q96KW2 1035 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF347Q96SE7 839 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 ZNF426Q9BUY5 554 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 MRI1Q9BV20 369 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 PCDHAC1Q9H158 963 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 CCDC167Q9P0B6 97 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 NPTNQ9Y639 398 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 AUP1Q9Y679 476 aa12.51□□□□□ -0.41
CCDC88B-201ENST00000301897 C5orf49A4QMS7 147 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 DNAJC9-AS1A6NH13 148 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 BLOC1S5-TXNDC5H3BN57 136 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 CLDN34H7C241 214 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 IGHMP01871 453 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 ACADSP16219 412 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 TNFSF4P23510 183 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 BAMBIQ13145 260 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 DUSP7Q16829 419 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 PAGE3Q5JUK9 113 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 THEM4Q5T1C6 240 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 ARL9Q6T311 187 aa12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 PATL1Q86TB9 770 aaKnown RBP12.5□□□□□ -0.41
CCDC88B-201ENST00000301897 KLHL36Q8N4N3 616 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms