RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	RPS23	P62266	143 aa	Known RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	SELENOW	P63302	87 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	CBX1	P83916	185 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	MYBPC1	Q00872	1141 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	PIGF	Q07326	219 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	DUSP7	Q16829	419 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	CARD17	Q5XLA6	110 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF813	Q6ZN06	617 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	CBLL1	Q75N03	491 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	ADPRHL1	Q8NDY3	354 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	LZIC	Q8WZA0	190 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	POP5	Q969H6	163 aa	Known RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	BTBD10	Q9BSF8	475 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	POLR2J2	Q9GZM3	115 aa	Known RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	POLR2J3	Q9H1A7	115 aa	Known RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	G6PC2	Q9NQR9	355 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF224	Q9NZL3	707 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	RPS6KB2	Q9UBS0	482 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	MAGEL2	Q9UJ55	1249 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	TRAV36DV7	A0A075B6V5	113 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	LOC105371242	A0A075B767	164 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	MS4A18	H0YCH9	400 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	AVP	P01185	164 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	HLA-DOB	P13765	273 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	ANPEP	P15144	967 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	CBL	P22681	906 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	PTDSS1	P48651	473 aa	Known RBP	11.61	□□□□□ -0.55
SS18-222	ENST00000582792	RAB1A	P62820	205 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	GALK2	Q01415	458 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	MFSD13A	Q14CX5	517 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	MS4A18	Q3C1V0	323 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	GLIPR1L2	Q4G1C9	344 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	CYBRD1	Q53TN4	286 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	GLYAT	Q6IB77	296 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	RANBP3L	Q86VV4	465 aa	Predicted RBP	11.61	□□□□□ -0.55
SS18-222	ENST00000582792	UEVLD	Q8IX04	471 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	SMYD1	Q8NB12	490 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	EMC6	Q9BV81	110 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	PCDHAC1	Q9H158	963 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	B3GAT2	Q9NPZ5	323 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	GMPR2	Q9P2T1	348 aa	Known RBP	11.61	□□□□□ -0.55
SS18-222	ENST00000582792	RPS6KA6	Q9UK32	745 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	FZR1	Q9UM11	496 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	POFUT2	Q9Y2G5	429 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	SNX13	Q9Y5W8	968 aa		11.61	□□□□□ -0.55
SS18-222	ENST00000582792	IGKV1D-42	A0A075B6H8	117 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792		A0A1W2PPW3	197 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	GYG2	O15488	501 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	UBL3	O95164	117 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	RAB36	O95755	333 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	HPR	P00739	348 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	OPN1SW	P03999	348 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	NAT2	P11245	290 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	B4GALT1	P15291	398 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	NQO1	P15559	274 aa	Known RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	GIPR	P48546	466 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	RGS8	P57771	180 aa	Predicted RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	LRRC23	Q53EV4	343 aa	Predicted RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	MTX3	Q5HYI7	312 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	SWT1	Q5T5J6	900 aa	Known RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	ACSM5	Q6NUN0	579 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	COMTD1	Q86VU5	262 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	OR6S1	Q8NH40	331 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	DNAJA4	Q8WW22	397 aa	Predicted RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	FAM162A	Q96A26	154 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	SLC41A3	Q96GZ6	507 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	FOXB1	Q99853	325 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF665	Q9H7R5	613 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	TMEM27	Q9HBJ8	222 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	DCAF13	Q9NV06	445 aa	Known RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	ACTR3B	Q9P1U1	418 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	SLC7A8	Q9UHI5	535 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	DUSP13	Q9UII6	198 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	FBXL3	Q9UKT7	428 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF346	Q9UL40	294 aa	Known RBP	11.6	□□□□□ -0.55
SS18-222	ENST00000582792	CORIN	Q9Y5Q5	1042 aa		11.6	□□□□□ -0.55
SS18-222	ENST00000582792		A0A087WUJ7	227 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792		A0A1B0GWA3	101 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	EBAG9	O00559	213 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	HTR2A	P28223	471 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	MAGEB1	P43366	347 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	NCALD	P61601	193 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	TRAP1	Q12931	704 aa	Known RBP	11.59	□□□□□ -0.55
SS18-222	ENST00000582792	TRIM25	Q14258	630 aa	Known RBP	11.59	□□□□□ -0.55
SS18-222	ENST00000582792	ALG10B	Q5I7T1	473 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	PGM2L1	Q6PCE3	622 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF613	Q6PF04	617 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	NHLRC1	Q6VVB1	395 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	C1QL2	Q7Z5L3	287 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	WDFY1	Q8IWB7	410 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	RNF148	Q8N7C7	305 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	SCAI	Q8N9R8	606 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	TXNDC15	Q96J42	360 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	SUCNR1	Q9BXA5	334 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	TMPRSS13	Q9BYE2	586 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	ULBP2	Q9BZM5	246 aa		11.59	□□□□□ -0.55
SS18-222	ENST00000582792	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.59	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms