RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CLHC1Q8NHS4 586 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 SFXN5Q8TD22 340 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 ACTRT1Q8TDG2 376 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 NSMAFQ92636 917 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 MOAP1Q96BY2 351 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 MRPL57Q9BQC6 102 aaKnown RBP13.25□□□□□ -0.29
VPS53-218ENST00000575207 TRIM31Q9BZY9 425 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 MRPL46Q9H2W6 279 aaKnown RBP13.25□□□□□ -0.29
VPS53-218ENST00000575207 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.25□□□□□ -0.29
VPS53-218ENST00000575207 WDR45Q9Y484 360 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 LOC102725191A0A1B0GVB3 256 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 H0YHG0 523 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 IFNL4K9M1U5 179 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 ZNF205O95201 554 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 CCDC159P0C7I6 412 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 TNFSF4P23510 183 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 FOXA1P55317 472 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 DGCR2P98153 550 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 GSTA3Q16772 222 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 CRIP3Q6Q6R5 217 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 PDZD9Q8IXQ8 264 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 OR5AK3PQ8NH89 298 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 MFSD8Q8NHS3 518 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 SLC25A36Q96CQ1 311 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 MTERF3Q96E29 417 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 METTL2AQ96IZ6 378 aaKnown RBP13.24□□□□□ -0.29
VPS53-218ENST00000575207 ULBP2Q9BZM5 246 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 RRAGDQ9NQL2 400 aaPredicted RBP13.24□□□□□ -0.29
VPS53-218ENST00000575207 IL19Q9UHD0 177 aa13.24□□□□□ -0.29
VPS53-218ENST00000575207 MEGF11A6BM72 1044 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 FZD7O75084 574 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 SBK3P0C264 359 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 SDC1P18827 310 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 NPY4RP50391 375 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 CD83Q01151 205 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 MTX3Q5HYI7 312 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 VRK2Q86Y07 508 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 ZNF101Q8IZC7 436 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 SLC25A40Q8TBP6 338 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 PNPT1Q8TCS8 783 aaKnown RBP13.23□□□□□ -0.29
VPS53-218ENST00000575207 ITLN1Q8WWA0 313 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 OR5P2Q8WZ92 322 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 MRRFQ96E11 262 aaKnown RBP13.23□□□□□ -0.29
VPS53-218ENST00000575207 TMEM237Q96Q45 408 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 OR2J1Q9GZK6 312 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 NPFFR1Q9GZQ6 430 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 WNT10AQ9GZT5 417 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 GCM1Q9NP62 436 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 RAB18Q9NP72 206 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 POLE3Q9NRF9 147 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 BAIAP2L1Q9UHR4 511 aa13.23□□□□□ -0.29
VPS53-218ENST00000575207 A0A1W2PRX2 142 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 CFAP73A6NFT4 308 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 EIF3HO15372 352 aaKnown RBP eCLIP13.22□□□□□ -0.297e-7■□□□□ 9.9
VPS53-218ENST00000575207 AHSA1O95433 338 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 ZNF26P17031 533 aaPredicted RBP13.22□□□□□ -0.29
VPS53-218ENST00000575207 MATN1P21941 496 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 PSMB10P40306 273 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 CRATP43155 626 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 DR1Q01658 176 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 EPS8Q12929 822 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 XKR7Q5GH72 579 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 TMEM53Q6P2H8 277 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 SLC22A24Q8N4F4 322 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 SCAIQ8N9R8 606 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 PNLDC1Q8NA58 520 aaKnown RBP13.22□□□□□ -0.29
VPS53-218ENST00000575207 MAGEB18Q96M61 343 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 DDOQ99489 341 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 PCDHAC1Q9H158 963 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 TBK1Q9UHD2 729 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 JRKLQ9Y4A0 524 aa13.22□□□□□ -0.29
VPS53-218ENST00000575207 HERC1Q15751 4861 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 IQCMA0A1B0GVH7 501 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 H3BSA7 217 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 ENTPD5O75356 428 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 C6orf47O95873 294 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 METAP1DQ6UB28 335 aaPredicted RBP13.21□□□□□ -0.29
VPS53-218ENST00000575207 LYPD2Q6UXB3 125 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 DPPA2Q7Z7J5 298 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 Q8N2B8 174 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 TMEM151AQ8N4L1 468 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 LINC00482Q8N8I6 264 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 OR6N1Q8NGY5 312 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 EMC6Q9BV81 110 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 PRDM4Q9UKN5 801 aa13.21□□□□□ -0.29
VPS53-218ENST00000575207 A0A096LPI6 279 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 H3BUX3 64 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 SURF4O15260 269 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 RAMP3O60896 148 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 WNT5AP41221 380 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 ZNF75DP51815 510 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 ARF6P62330 175 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 PLP2Q04941 152 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 UAP1Q16222 522 aaPredicted RBP13.2□□□□□ -0.3
VPS53-218ENST00000575207 LSM12Q3MHD2 195 aaKnown RBP13.2□□□□□ -0.3
VPS53-218ENST00000575207 DCDC5Q6ZRR9 648 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 MIER2Q8N344 545 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 VPS37AQ8NEZ2 397 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 OR2Z1Q8NG97 314 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 MAELQ96JY0 434 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms