RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 RASL10BQ96S79 203 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 SECISBP2Q96T21 854 aaKnown RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 FAM173AQ9BQD7 235 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 REEP4Q9H6H4 257 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 VIPAS39Q9H9C1 493 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 C3orf14Q9HBI5 128 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 LRTM1Q9HBL6 345 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 MYNNQ9NPC7 610 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 TEX10Q9NXF1 929 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 SEC14L3Q9UDX4 400 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 ZNF225Q9UK10 706 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 CES1P1Q9UKY3 287 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 BOKQ9UMX3 212 aaPredicted RBP3.37□□□□□ -1.87
NUP88-202ENST00000570937 STUB1Q9UNE7 303 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 ERVK-19Q9WJR5 959 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 FIS1Q9Y3D6 152 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 OR10H1Q9Y4A9 318 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 CSAG2Q9Y5P2 127 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 DNAJC15Q9Y5T4 150 aa3.37□□□□□ -1.87
NUP88-202ENST00000570937 COL6A6A6NMZ7 2263 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 SCN3AQ9NY46 2000 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 TMEM120BA0PK00 339 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FRG2CA6NGY1 282 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 C15orf61A6NNL5 157 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 WASHC1A8K0Z3 465 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 NPIPA5E9PKD4 350 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 E9PQ18 207 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 LSM1O15116 133 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 PEX11AO75192 247 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 OR6B1O95007 311 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 NXPH2O95156 264 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 CHRNGP07510 517 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 KRT16P08779 473 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 IFI6P09912 130 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 NR2F1P10589 423 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ABOP16442 354 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 BGNP21810 368 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ELAVL4P26378 380 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 SOX3P41225 446 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 PPICP45877 212 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ALDH3A2P51648 485 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 NCBP2P52298 156 aaKnown RBP eCLIP3.36□□□□□ -1.87
NUP88-202ENST00000570937 PSMD4P55036 377 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 MAGOHP61326 146 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 LMO4P61968 165 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 PPIAP62937 165 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 RPL38P63173 70 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 PLGLB1Q02325 96 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 EMX2Q04743 252 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 PLCXD2Q0VAA5 305 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 SQLEQ14534 574 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 SLC10A1Q14973 349 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 KIAA0040Q15053 153 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 CEBPEQ15744 281 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ZNF791Q3KP31 576 aaPredicted RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 HSP90B2PQ58FF3 399 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 TNFAIP8L3Q5GJ75 292 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 SLC35D3Q5M8T2 416 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 CPTPQ5TA50 214 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 AGBL2Q5U5Z8 902 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FAM71E1Q6IPT2 247 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 DGAT2L6Q6ZPD8 337 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ZCCHC23Q6ZST2 131 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FAM47EQ6ZV65 393 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 NUP54Q7Z3B4 507 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 C9orf40Q8IXQ3 194 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 CDK20Q8IZL9 346 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FBXW8Q8N3Y1 598 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ZNF615Q8N8J6 731 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FNDC5Q8NAU1 212 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ZFP62Q8NB50 900 aaPredicted RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 OR52R1Q8NGF1 315 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ZNF675Q8TD23 568 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 PAQR8Q8TEZ7 354 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 SSC4DQ8WTU2 575 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 DYDC1Q8WWB3 177 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 EXOSC8Q96B26 276 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 C11orf24Q96F05 449 aaPredicted RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 C18orf12Q96KH6 178 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 GPR137Q96N19 417 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FAM210AQ96ND0 272 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 TAAR6Q96RI8 345 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 ABHD1Q96SE0 405 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 NPAS2Q99743 824 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 EBPLQ9BY08 206 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 WWTR1Q9GZV5 400 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 LIN28AQ9H9Z2 209 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 IL1RL2Q9HB29 575 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 TMBIM4Q9HC24 238 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 SDHAF3Q9NRP4 125 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 MAN2C1Q9NTJ4 1040 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 DDX18Q9NVP1 670 aaKnown RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 ZNF223Q9UK11 482 aaPredicted RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 NPIPA1Q9UND3 350 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 POLR3HQ9Y535 204 aaPredicted RBP3.36□□□□□ -1.87
NUP88-202ENST00000570937 CCDC88CQ9P219 2028 aa3.36□□□□□ -1.87
NUP88-202ENST00000570937 FER1L5A0AVI2 2057 aa3.35□□□□□ -1.87
NUP88-202ENST00000570937 CFAP46Q8IYW2 2715 aa3.35□□□□□ -1.87
NUP88-202ENST00000570937 PRRC2CQ9Y520 2896 aaKnown RBP3.35□□□□□ -1.87
NUP88-202ENST00000570937 NUP210LQ5VU65 1888 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms