RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 FITM2Q8N6M3 262 aa15.04■□□□□ -0
CLK3-227ENST00000570296 VPS37AQ8NEZ2 397 aa15.04■□□□□ -0
CLK3-227ENST00000570296 GATAD2BQ8WXI9 593 aa15.04■□□□□ -0
CLK3-227ENST00000570296 SAMD8Q96LT4 415 aa15.04■□□□□ -0
CLK3-227ENST00000570296 DPAGT1Q9H3H5 408 aa15.04■□□□□ -0
CLK3-227ENST00000570296 RNF121Q9H920 327 aa15.04■□□□□ -0
CLK3-227ENST00000570296 ACOXLQ9NUZ1 547 aa15.04■□□□□ -0
CLK3-227ENST00000570296 GIMAP2Q9UG22 337 aa15.04■□□□□ -0
CLK3-227ENST00000570296 EMCNQ9ULC0 261 aa15.04■□□□□ -0
CLK3-227ENST00000570296 STAB2Q8WWQ8 2551 aa15.04■□□□□ -0
CLK3-227ENST00000570296 DNAH1Q9P2D7 4330 aa15.03■□□□□ -0
CLK3-227ENST00000570296 IQCMA0A1B0GVH7 501 aa15.03■□□□□ -0
CLK3-227ENST00000570296 ZNF726A6NNF4 738 aa15.03■□□□□ -0
CLK3-227ENST00000570296 MS4A18H0YCH9 400 aa15.03■□□□□ -0
CLK3-227ENST00000570296 FARS2O95363 451 aaKnown RBP15.03■□□□□ -0
CLK3-227ENST00000570296 HPRP00739 348 aa15.03■□□□□ -0
CLK3-227ENST00000570296 THRBP10828 461 aa15.03■□□□□ -0
CLK3-227ENST00000570296 HLA-DOBP13765 273 aa15.03■□□□□ -0
CLK3-227ENST00000570296 TNFRSF1AP19438 455 aa15.03■□□□□ -0
CLK3-227ENST00000570296 CSNK1A1P48729 337 aa15.03■□□□□ -0
CLK3-227ENST00000570296 PLP2Q04941 152 aa15.03■□□□□ -0
CLK3-227ENST00000570296 MS4A18Q3C1V0 323 aa15.03■□□□□ -0
CLK3-227ENST00000570296 XKR7Q5GH72 579 aa15.03■□□□□ -0
CLK3-227ENST00000570296 THEM4Q5T1C6 240 aa15.03■□□□□ -0
CLK3-227ENST00000570296 UNQ6126/PRO20091Q6UXV3 157 aa15.03■□□□□ -0
CLK3-227ENST00000570296 NHLRC1Q6VVB1 395 aa15.03■□□□□ -0
CLK3-227ENST00000570296 PEX5LQ8IYB4 626 aa15.03■□□□□ -0
CLK3-227ENST00000570296 MIER2Q8N344 545 aa15.03■□□□□ -0
CLK3-227ENST00000570296 ACMSDQ8TDX5 336 aa15.03■□□□□ -0
CLK3-227ENST00000570296 SH3GL3Q99963 347 aa15.03■□□□□ -0
CLK3-227ENST00000570296 C1orf50Q9BV19 199 aa15.03■□□□□ -0
CLK3-227ENST00000570296 TRIM15Q9C019 465 aa15.03■□□□□ -0
CLK3-227ENST00000570296 TMEM165Q9HC07 324 aa15.03■□□□□ -0
CLK3-227ENST00000570296 MIOXQ9UGB7 285 aa15.03■□□□□ -0
CLK3-227ENST00000570296 PYCARDQ9ULZ3 195 aa15.03■□□□□ -0
CLK3-227ENST00000570296 H3BSA7 217 aa15.02■□□□□ -0
CLK3-227ENST00000570296 P2RY10O00398 339 aa15.02■□□□□ -0
CLK3-227ENST00000570296 PEX11AO75192 247 aa15.02■□□□□ -0
CLK3-227ENST00000570296 SLC36A2Q495M3 483 aa15.02■□□□□ -0
CLK3-227ENST00000570296 LIN52Q52LA3 116 aa15.02■□□□□ -0
CLK3-227ENST00000570296 SPATA46Q5T0L3 261 aa15.02■□□□□ -0
CLK3-227ENST00000570296 IL23RQ5VWK5 629 aa15.02■□□□□ -0
CLK3-227ENST00000570296 OR4F3Q6IEY1 312 aa15.02■□□□□ -0
CLK3-227ENST00000570296 OR4S1Q8NGB4 309 aa15.02■□□□□ -0
CLK3-227ENST00000570296 KLF14Q8TD94 323 aaPredicted RBP15.02■□□□□ -0
CLK3-227ENST00000570296 TWIST2Q8WVJ9 160 aa15.02■□□□□ -0
CLK3-227ENST00000570296 CFHR4Q92496 578 aa15.02■□□□□ -0
CLK3-227ENST00000570296 SLC38A4Q969I6 547 aa15.02■□□□□ -0
CLK3-227ENST00000570296 TAAR8Q969N4 342 aa15.02■□□□□ -0
CLK3-227ENST00000570296 NEIL1Q96FI4 390 aaPredicted RBP15.02■□□□□ -0
CLK3-227ENST00000570296 TXNDC15Q96J42 360 aa15.02■□□□□ -0
CLK3-227ENST00000570296 RHOXF2Q9BQY4 288 aa15.02■□□□□ -0
CLK3-227ENST00000570296 MSL2Q9HCI7 577 aa15.02■□□□□ -0
CLK3-227ENST00000570296 TMEM38BQ9NVV0 291 aa15.02■□□□□ -0
CLK3-227ENST00000570296 MARCOQ9UEW3 520 aaPredicted RBP15.02■□□□□ -0
CLK3-227ENST00000570296 DCDC2Q9UHG0 476 aa15.02■□□□□ -0
CLK3-227ENST00000570296 NQO1P15559 274 aaKnown RBP15.01□□□□□ -0.01
CLK3-227ENST00000570296 TNFSF4P23510 183 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 APLNRP35414 380 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 PCBP3P57721 371 aaKnown RBP15.01□□□□□ -0.01
CLK3-227ENST00000570296 TXNL4AP83876 142 aaKnown RBP15.01□□□□□ -0.01
CLK3-227ENST00000570296 CDK5R2Q13319 367 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 ZNF836Q6ZNA1 936 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 ZNF101Q8IZC7 436 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 RBM15BQ8NDT2 890 aaKnown RBP15.01□□□□□ -0.01
CLK3-227ENST00000570296 VANGL1Q8TAA9 524 aaPredicted RBP15.01□□□□□ -0.01
CLK3-227ENST00000570296 SLC41A3Q96GZ6 507 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 PCGF1Q9BSM1 259 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 FBLN5Q9UBX5 448 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 PPP1R3CQ9UQK1 317 aa15.01□□□□□ -0.01
CLK3-227ENST00000570296 A0A087WUJ7 227 aa15□□□□□ -0.01
CLK3-227ENST00000570296 CENPVL3A0A0U1RRI6 287 aa15□□□□□ -0.01
CLK3-227ENST00000570296 C3orf84H3BNL1 204 aa15□□□□□ -0.01
CLK3-227ENST00000570296 TMEM178BH3BS89 294 aa15□□□□□ -0.01
CLK3-227ENST00000570296 MGRN1O60291 552 aa15□□□□□ -0.01
CLK3-227ENST00000570296 PRG2P13727 222 aa15□□□□□ -0.01
CLK3-227ENST00000570296 CHI3L1P36222 383 aaPredicted RBP15□□□□□ -0.01
CLK3-227ENST00000570296 TGFBR2P37173 567 aa15□□□□□ -0.01
CLK3-227ENST00000570296 CD69Q07108 199 aa15□□□□□ -0.01
CLK3-227ENST00000570296 SMU1Q2TAY7 513 aa15□□□□□ -0.01
CLK3-227ENST00000570296 UGT3A2Q3SY77 523 aa15□□□□□ -0.01
CLK3-227ENST00000570296 NRN1LQ496H8 165 aa15□□□□□ -0.01
CLK3-227ENST00000570296 MTX3Q5HYI7 312 aa15□□□□□ -0.01
CLK3-227ENST00000570296 C6orf136Q5SQH8 315 aa15□□□□□ -0.01
CLK3-227ENST00000570296 SLC27A4Q6P1M0 643 aa15□□□□□ -0.01
CLK3-227ENST00000570296 SLC16A14Q7RTX9 510 aa15□□□□□ -0.01
CLK3-227ENST00000570296 PTOV1Q86YD1 416 aa15□□□□□ -0.01
CLK3-227ENST00000570296 SCAIQ8N9R8 606 aa15□□□□□ -0.01
CLK3-227ENST00000570296 FNDC5Q8NAU1 212 aa15□□□□□ -0.01
CLK3-227ENST00000570296 SLC25A40Q8TBP6 338 aa15□□□□□ -0.01
CLK3-227ENST00000570296 OR2J1Q9GZK6 312 aa15□□□□□ -0.01
CLK3-227ENST00000570296 EIF3KQ9UBQ5 218 aaKnown RBP15□□□□□ -0.01
CLK3-227ENST00000570296 TRAV36DV7A0A075B6V5 113 aa14.99□□□□□ -0.01
CLK3-227ENST00000570296 A0A087WUV0 522 aaPredicted RBP14.99□□□□□ -0.01
CLK3-227ENST00000570296 EXOC1LA0A1B0GW35 172 aa14.99□□□□□ -0.01
CLK3-227ENST00000570296 IFNL4K9M1U5 179 aa14.99□□□□□ -0.01
CLK3-227ENST00000570296 ENSAO43768 121 aaKnown RBP14.99□□□□□ -0.01
CLK3-227ENST00000570296 PROCP04070 461 aa14.99□□□□□ -0.01
CLK3-227ENST00000570296 FGF4P08620 206 aa14.99□□□□□ -0.01
CLK3-227ENST00000570296 CFHR2P36980 270 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms