RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CSMD1Q96PZ7 3565 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 IGHV1-18A0A0C4DH31 117 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 SHISA9B4DS77 424 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 GNGT2O14610 69 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ARHGEF9O43307 516 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 CST1P01037 141 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 IGLV1-44P01699 117 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 CECR9P0C854 216 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 APEHP13798 732 aaKnown RBP11.32□□□□□ -0.6
CLK3-224ENST00000568605 NPR2P20594 1047 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 GSTM3P21266 225 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 PTDSS1P48651 473 aaKnown RBP11.32□□□□□ -0.6
CLK3-224ENST00000568605 HMGA2P52926 109 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ERVK-25P63136 954 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 RUNX1T1Q06455 604 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 SPOCK1Q08629 439 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 FHL1Q13642 323 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 AGAP6Q5VW22 663 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ZNF544Q6NX49 715 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 PGBD2Q6P3X8 592 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 LRFN4Q6PJG9 635 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 DPY19L2P2Q6ZN68 376 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ZER1Q7Z7L7 766 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 WDFY1Q8IWB7 410 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ADGRG5Q8IZF4 528 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 FBXL14Q8N1E6 418 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 LRRC75A-AS1Q8N1F1 130 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 SLC22A24Q8N4F4 322 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 CANT1Q8WVQ1 401 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 DHRS9Q9BPW9 319 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 OR52D1Q9H346 318 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 C1orf198Q9H425 327 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 NRIP3Q9NQ35 241 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 SLC7A8Q9UHI5 535 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ADAM18Q9Y3Q7 739 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 ATP23Q9Y6H3 246 aa11.32□□□□□ -0.6
CLK3-224ENST00000568605 TEX13CA0A0J9YWL9 993 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 ATP6V1G2-DDX39BF2Z307 99 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 EBAG9O00559 213 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 PTP4A3O75365 173 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 E2F6O75461 281 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 CIB2O75838 187 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 SLC2A10O95528 541 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 PTHP01270 115 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 HLA-HP01893 362 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 BMP4P12644 408 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 NOS3P29474 1203 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 GSSP48637 474 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 MRPS34P82930 218 aaKnown RBP11.31□□□□□ -0.6
CLK3-224ENST00000568605 NAAAQ02083 359 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 FMODQ06828 376 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 MESTQ5EB52 335 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 DNM1P34Q6PK57 102 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 ZNF620Q6ZNG0 422 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 SLC16A14Q7RTX9 510 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 FAM122BQ7Z309 247 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 OR4F15Q8NGB8 312 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 OR9Q2Q8NGE9 314 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 SMAP2Q8WU79 429 aaPredicted RBP11.31□□□□□ -0.6
CLK3-224ENST00000568605 GTPBP3Q969Y2 492 aaKnown RBP11.31□□□□□ -0.6
CLK3-224ENST00000568605 Q96M85 177 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 CHID1Q9BWS9 393 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 CXXC4Q9H2H0 198 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 MOKQ9UQ07 419 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 LAMP3Q9UQV4 416 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 CDH10Q9Y6N8 788 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 U3KQV3 271 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 OTOGQ6ZRI0 2925 aa11.31□□□□□ -0.6
CLK3-224ENST00000568605 A0A1W2PPL8 197 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 TCRBV3S1A0A5B6 114 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 PRSS37A4D1T9 235 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 ARRDC5A6NEK1 342 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 SOCS2O14508 198 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 IMPA2O14732 288 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 FKBP6O75344 327 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 PPP1R3DO95685 299 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 GIPRP48546 466 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 ARHGDIAP52565 204 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 RAB1AP62820 205 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 CBX1P83916 185 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 GALK2Q01415 458 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 PLP2Q04941 152 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 PIGFQ07326 219 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 MICAQ29983 383 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 RFX4Q33E94 735 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 C1orf146Q5VVC0 180 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 SLC25A47Q6Q0C1 308 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 SPNS3Q6ZMD2 512 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 THSD4Q6ZMP0 1018 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 JAZF1Q86VZ6 243 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 SKA3Q8IX90 412 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 AQP11Q8NBQ7 271 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 OR4C15Q8NGM1 316 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 LILRB1Q8NHL6 650 aaPredicted RBP11.3□□□□□ -0.6
CLK3-224ENST00000568605 NSMAFQ92636 917 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 NEUROG1Q92886 237 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 RASD2Q96D21 266 aa11.3□□□□□ -0.6
CLK3-224ENST00000568605 NMD3Q96D46 503 aaKnown RBP11.3□□□□□ -0.6
CLK3-224ENST00000568605 TRMT61AQ96FX7 289 aaKnown RBP11.3□□□□□ -0.6
CLK3-224ENST00000568605 ERMAPQ96PL5 475 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms