RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	CLDN8	P56748	225 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	BTG1	P62324	171 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	TBC1D28	Q2M2D7	210 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF774	Q6NX45	483 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	CCDC63	Q8NA47	563 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	CPEB3	Q8NE35	698 aa	Known RBP	9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	OR52P1P	Q8NH57	321 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	DACT3	Q96B18	629 aa	Predicted RBP	9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	FAM71F1	Q96KD3	344 aa	Predicted RBP	9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	SSBP3	Q9BWW4	388 aa	Predicted RBP	9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	KRTAP17-1	Q9BYP8	105 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	NECAP2	Q9NVZ3	263 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	CHST2	Q9Y4C5	530 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	GPR45	Q9Y5Y3	372 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	POMT1	Q9Y6A1	747 aa		9.82	□□□□□ -0.84
CLK3-222	ENST00000568232	DNAH9	Q9NYC9	4486 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	RYR2	Q92736	4967 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF726	A6NNF4	738 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	CEACAM18	A8MTB9	384 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	RRP9	O43818	475 aa	Known RBP	9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	NR2F1	P10589	423 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	CCNO	P22674	350 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	PCBP3	P57721	371 aa	Known RBP	9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	RPL15	P61313	204 aa	Known RBP	9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	FGF12	P61328	243 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	TNFAIP6	P98066	277 aa	Predicted RBP	9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF718	Q3SXZ3	478 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	CCDC153	Q494R4	210 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	COX20	Q5RI15	118 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	FAM69A	Q5T7M9	428 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	GPR157	Q5UAW9	335 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	SNX32	Q86XE0	403 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	PEX5L	Q8IYB4	626 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF101	Q8IZC7	436 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF283	Q8N7M2	679 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	OR8J2	Q8NGG1	315 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	SLC25A40	Q8TBP6	338 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	SSMEM1	Q8WWF3	244 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	PPP1R14A	Q96A00	147 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	MARS2	Q96GW9	593 aa	Known RBP	9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	SIGLEC11	Q96RL6	698 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	ARHGDIG	Q99819	225 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	NANOG	Q9H9S0	305 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	LRCH1	Q9Y2L9	728 aa		9.81	□□□□□ -0.84
CLK3-222	ENST00000568232	IGKV1D-42	A0A075B6H8	117 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232		A0A087WUJ7	227 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	KIR2DS1	A0A191URI9	304 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	PRSS51	A0A1B0GVH4	220 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	DHH	O43323	396 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	OR2T1	O43869	369 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	NPHS1	O60500	1241 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF205	O95201	554 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	CD55	P08174	381 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	ADH4	P08319	380 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	WNT5A	P41221	380 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	CSNK1A1	P48729	337 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	EGR3	Q06889	387 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	DBP	Q10586	325 aa	Predicted RBP	9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	LIN52	Q52LA3	116 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	C8orf74	Q6P047	294 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	TMEM53	Q6P2H8	277 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	VASH1	Q7L8A9	365 aa	Predicted RBP	9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	LINC00528	Q8N1L1	170 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	MNS1	Q8NEH6	495 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	VPS37A	Q8NEZ2	397 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	OR4K5	Q8NGD3	323 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	OR1J2	Q8NGS2	313 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	TBC1D15	Q8TC07	691 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	KLF14	Q8TD94	323 aa	Predicted RBP	9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	IFT81	Q8WYA0	676 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	OR2J1	Q9GZK6	312 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	TMEM38B	Q9NVV0	291 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	ZDHHC8	Q9ULC8	765 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF443	Q9Y2A4	671 aa	Predicted RBP	9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	TANC2	Q9HCD6	1990 aa		9.8	□□□□□ -0.84
CLK3-222	ENST00000568232	PLXNB1	O43157	2135 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	TRAV36DV7	A0A075B6V5	113 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF816-ZNF321P	A0A0X1KG74	233 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	IQCM	A0A1B0GVH7	501 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	MPIG6B	O95866	241 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	SFTPB	P07988	381 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	AHCY	P23526	432 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	ECHS1	P30084	290 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	MDH2	P40926	338 aa	Known RBP	9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	BID	P55957	195 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	GNB2	P62879	340 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	CASP8	Q14790	479 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	PCLAF	Q15004	111 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	LRFN4	Q6PJG9	635 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	ZNF572	Q7Z3I7	529 aa	Predicted RBP	9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	FITM2	Q8N6M3	262 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	C11orf44	Q8N8P7	122 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	RBM15B	Q8NDT2	890 aa	Known RBP	9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	ADPRHL1	Q8NDY3	354 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	SLC38A4	Q969I6	547 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	TMEM54	Q969K7	222 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	TUBGCP3	Q96CW5	907 aa		9.79	□□□□□ -0.84
CLK3-222	ENST00000568232	SLC41A3	Q96GZ6	507 aa		9.79	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms