RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	RAD21L1	Q9H4I0	556 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	UNKL	Q9H9P5	680 aa	Known RBP	10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	SAP30L	Q9HAJ7	183 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	CACNG2	Q9Y698	323 aa		10.76	□□□□□ -0.69
SHMT2-223	ENST00000556689	PPIAL4E	A0A075B759	164 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	PPIAL4C	A0A0B4J2A2	164 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	LRRN3	E7EW58	273 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	C11orf98	E9PRG8	122 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	PPIAL4D	F5H284	164 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	SNAP29	O95721	258 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	IGHV3-13	P01766	116 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ADORA3	P0DMS8	318 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	PPIAL4F	P0DN26	164 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	BMP2	P12643	396 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZNF81	P51508	661 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ERVS71-1	P61550	626 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	NCALD	P61601	193 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	FADD	Q13158	208 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR1Q1	Q15612	314 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	NXN	Q6DKJ4	435 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	LRFN4	Q6PJG9	635 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	DHRS4L2	Q6PKH6	230 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	DOK3	Q7L591	496 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	KRT73	Q86Y46	540 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ICA1L	Q8NDH6	482 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR5J2	Q8NH18	312 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	BCAS4	Q8TDM0	211 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ST7L	Q8TDW4	575 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	POP5	Q969H6	163 aa	Known RBP	10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZNF566	Q969W8	418 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	DUX5	Q96PT3	197 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	SPATA5L1	Q9BVQ7	753 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	C1QTNF5	Q9BXJ0	243 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZMAT3	Q9HA38	289 aa	Known RBP	10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	TCF7L2	Q9NQB0	619 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	TMEM38B	Q9NVV0	291 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	NUP50	Q9UKX7	468 aa		10.75	□□□□□ -0.69
SHMT2-223	ENST00000556689	IQCM	A0A1B0GVH7	501 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	ISPD	A4D126	451 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	DHH	O43323	396 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	SPRY3	O43610	288 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	TPST1	O60507	370 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	FOXH1	O75593	365 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	MT-ATP6	P00846	226 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	POLR2J	P52435	117 aa	Known RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	CDH12	P55289	794 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	STX1B	P61266	288 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	IL13RA1	P78552	427 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	CBX1	P83916	185 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	PLP2	Q04941	152 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC3A1	Q07837	685 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	TUSC1	Q2TAM9	212 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC36A2	Q495M3	483 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	FAM209A	Q5JX71	171 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC35D2	Q76EJ3	337 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZNF771	Q7L3S4	317 aa	Predicted RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC16A14	Q7RTX9	510 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	COMTD1	Q86VU5	262 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	CPEB3	Q8NE35	698 aa	Known RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR4K5	Q8NGD3	323 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	OR1J1	Q8NGS3	322 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	STON2	Q8WXE9	905 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	GTF3A	Q92664	365 aa	Known RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC25A44	Q96H78	314 aa	Predicted RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	ELAC2	Q9BQ52	826 aa	Known RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	TMEM43	Q9BTV4	400 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	PAIP1	Q9H074	479 aa	Known RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	UBAP1	Q9NZ09	502 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZIM2	Q9NZV7	527 aa		10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	TES	Q9UGI8	421 aa	Known RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689	LEF1	Q9UJU2	399 aa	Predicted RBP	10.74	□□□□□ -0.69
SHMT2-223	ENST00000556689		A0A0B4J2E0	115 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689		A0A1B0GX12	115 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	PRORSD1P	A6NEY8	169 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	DNAJC9-AS1	A6NH13	148 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	DCTN3	O75935	186 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	UBOX5	O94941	541 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	MFN2	O95140	757 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	QDPR	P09417	244 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	MAK	P20794	623 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZFP36	P26651	326 aa	Known RBP	10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	ATP4B	P51164	291 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	GLO1	Q04760	184 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	BAMBI	Q13145	260 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	ZNF718	Q3SXZ3	478 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	MIDN	Q504T8	468 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	ARMCX4	Q5H9R4	360 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	REEP3	Q6NUK4	255 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	SYT14	Q8NB59	555 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	CCDC197	Q8NCU1	140 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	RBM15B	Q8NDT2	890 aa	Known RBP	10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	NFKBID	Q8NI38	313 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	GTF2H4	Q92759	462 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	SLC25A28	Q96A46	364 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	THOC1	Q96FV9	657 aa	Known RBP	10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	CCT8L2	Q96SF2	557 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	TMEM120A	Q9BXJ8	343 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	EGLN1	Q9GZT9	426 aa		10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	SDR39U1	Q9NRG7	319 aa	Predicted RBP	10.73	□□□□□ -0.69
SHMT2-223	ENST00000556689	PLEK2	Q9NYT0	353 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms