RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SLC38A3Q99624 504 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 GAL3ST1Q99999 423 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 USB1Q9BQ65 265 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 LMF2Q9BU23 707 aaKnown RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 LMAN2LQ9H0V9 348 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 APMAPQ9HDC9 416 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 FAM60AQ9NP50 221 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM138Q9NPI0 162 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 IFT46Q9NQC8 304 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-212ENST00000552491 STEAP1Q9UHE8 339 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 IKZF2Q9UKS7 526 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 FBXO4Q9UKT5 387 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 CLDN16Q9Y5I7 305 aa4.91□□□□□ -1.62
LIMA1-212ENST00000552491 C17orf51A8MQB3 221 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 PLRG1O43660 514 aaKnown RBP4.9□□□□□ -1.62
LIMA1-212ENST00000552491 OR10H2O60403 315 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 ALOX12BO75342 701 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF254O75437 659 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 PLATP00750 562 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 SLC35E2P0CK97 266 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 MYOGP15173 224 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 RPA2P15927 270 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 FNTBP49356 437 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 LBX1P52954 281 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 CTXN1P60606 82 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 PRPS1P60891 318 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 CD226Q15762 336 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF74Q16587 644 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 C2orf76Q3KRA6 126 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 C4orf46Q504U0 113 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 MESTQ5EB52 335 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 WDR38Q5JTN6 314 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM31Q5JXX7 168 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 FAM220AQ7Z4H9 259 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 KRT77Q7Z794 578 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 GALNT16Q8N428 558 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 CSNK1A1LQ8N752 337 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 FRMD1Q8N878 549 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 OR6N2Q8NGY6 317 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 TNFAIP8L1Q8WVP5 186 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 ST8SIA2Q92186 375 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 MCHR2Q969V1 340 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 PAWRQ96IZ0 340 aaKnown RBP4.9□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF75AQ96N20 296 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 TINAGL1Q9GZM7 467 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-212ENST00000552491 ALX4Q9H161 411 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-212ENST00000552491 SLC25A32Q9H2D1 315 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 POFUT1Q9H488 388 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 MRTO4Q9UKD2 239 aaKnown RBP4.9□□□□□ -1.62
LIMA1-212ENST00000552491 SLC22A13Q9Y226 551 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 HIF3AQ9Y2N7 669 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 SLC6A5Q9Y345 797 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 LAMA1P25391 3075 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 RP1P56715 2156 aa4.9□□□□□ -1.62
LIMA1-212ENST00000552491 A0A1B0GW55 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SERINC4A6NH21 518 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RFPL4AA6NLU0 287 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RFPL4AL1F8VTS6 287 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 M0QYG6 137 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF432O94892 652 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 WNT11O96014 354 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 PNPP00491 289 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ITGB2P05107 769 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 CD14P08571 375 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 OR4E1P0C645 316 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4L2P0CJ85 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4L3P0CJ86 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4L4P0CJ87 422 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4L5P0CJ88 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4L6P0CJ89 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4L7P0CJ90 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 AKAIN1P0CW23 69 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 PRKACAP17612 351 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ALOX5APP20292 161 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SLC25A1P53007 311 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 BTG2P78543 158 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RPL18Q07020 188 aaKnown RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 BEX5Q5H9J7 111 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 C11orf88Q6PI97 169 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RNF44Q7L0R7 432 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF227Q86WZ6 799 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SDR16C5Q8N3Y7 309 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF676Q8N7Q3 588 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 BCORP1Q8N888 145 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 BOLLQ8N9W6 283 aaKnown RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 PLPP7Q8NBV4 271 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 PXT1Q8NFP0 134 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 OR10K1Q8NGX5 313 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF417Q8TAU3 575 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 BAHD1Q8TBE0 780 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 HLA-CQ95604 372 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RERGQ96A58 199 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 BMFQ96LC9 184 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 C4orf45Q96LM5 186 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 TSPAN32Q96QS1 320 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 LPAR4Q99677 370 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 NPAS1Q99742 590 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RPP25Q9BUL9 199 aaKnown RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms