RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PSMD13Q9UNM6 376 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 SACSQ9NZJ4 4579 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 DOCK4Q8N1I0 1966 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 DNAJC13O75165 2243 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 A0A075B6Q4 140 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 A0A087WW49 117 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 USP27XA6NNY8 438 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 SRRM4A7MD48 611 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 C11orf98E9PRG8 122 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 SLCO1B7G3V0H7 640 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 BLOC1S5-TXNDC5H3BN57 136 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 GOLGA8SH3BPF8 625 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 FBP2O00757 339 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 TRAFD1O14545 582 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 PDE5AO76074 875 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 AP2A2O94973 939 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 NUDT14O95848 222 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 AGTP01019 485 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ACADSP16219 412 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR1D4P47884 311 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CRYBA2P53672 197 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 PLA2G16P53816 162 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 RPS27AP62979 156 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF33BQ06732 778 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 RGS1Q08116 209 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 UBE2V2Q15819 145 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CNPY1Q3B7I2 92 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 GLIPR1L2Q4G1C9 344 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF585BQ52M93 769 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 UNC50Q53HI1 259 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 PRAMEF5Q5TYX0 476 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 TAF3Q5VWG9 929 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 PRAMEF6Q5VXH4 476 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 APOOLQ6UXV4 268 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 FAM183BPQ6ZVS7 135 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 STXBP4Q6ZWJ1 553 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 MTURNQ8N3F0 131 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CEP112Q8N8E3 955 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 SAMD12Q8N8I0 201 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ZSCAN4Q8NAM6 433 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 FAM184AQ8NB25 1140 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR4F17Q8NGA8 305 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR4E2Q8NGC2 313 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR8J1Q8NGP2 316 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR4F5Q8NH21 305 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 MRGPRDQ8TDS7 321 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 EMG1Q92979 244 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ECHDC3Q96DC8 303 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CXorf40BQ96DE9 158 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ZBED6CLQ96FA7 236 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CELF6Q96J87 481 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF641Q96N77 438 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 AMDHD1Q96NU7 426 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ALKBH3Q96Q83 286 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR4F4Q96R69 305 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 C19orf43Q9BQ61 176 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 SLC30A2Q9BRI3 323 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 REG4Q9BYZ8 158 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 DEFB127Q9H1M4 99 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 OR2AG1Q9H205 316 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 FNDC4Q9H6D8 234 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 METTL7AQ9H8H3 244 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 UTP6Q9NYH9 597 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 STOX2Q9P2F5 926 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CIDEBQ9UHD4 219 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 CRLS1Q9UJA2 301 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 PURGQ9UJV8 347 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 EMCNQ9ULC0 261 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 KIAA1257Q9ULG3 409 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 EIF3LQ9Y262 564 aaKnown RBP3.14□□□□□ -1.91
LIMA1-208ENST00000551691 ALG6Q9Y672 507 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 AUP1Q9Y679 476 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 KIAA1549Q9HCM3 1950 aa3.14□□□□□ -1.91
LIMA1-208ENST00000551691 MED12Q93074 2177 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 LOC100653049A0A140TA62 436 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 TUBAL3A6NHL2 446 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 FBLL1A6NHQ2 334 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 C15orf61A6NNL5 157 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 IDSB3KWA1 339 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PPIHO43447 177 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 LMX1BO60663 402 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 RHBDL1O75783 438 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 OR2B3O76000 313 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 KRT34O76011 436 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PPP1R3DO95685 299 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 HPP00738 406 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 UQCRHP07919 91 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 SP1P08047 785 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 IGFBP1P08833 259 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 OR9G9P0C7N8 305 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF7P17097 686 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 IDSP22304 550 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 GALP22466 123 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PRKACGP22612 351 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 ATP5A1P25705 553 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PDHA2P29803 388 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 EFNA3P52797 238 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 PRRX1P54821 245 aa3.13□□□□□ -1.91
LIMA1-208ENST00000551691 SNRPFP62306 86 aaKnown RBP3.13□□□□□ -1.91
LIMA1-208ENST00000551691 BCL2L1Q07817 233 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms