RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 APMAPQ9HDC9 416 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 MAN2C1Q9NTJ4 1040 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 MEMO1Q9Y316 297 aa13.66□□□□□ -0.22
CUX1-214ENST00000550008 IGHV1OR21-1A0A087WYE8 117 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 GGT3PA6NGU5 568 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 DPM1O60762 260 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 SERPINA5P05154 406 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 ZNF806P0C7X5 589 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 PSMB1P20618 241 aaKnown RBP13.65□□□□□ -0.22
CUX1-214ENST00000550008 SSR4P51571 173 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 RIN1Q13671 783 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 ZNF321PQ8N8H1 164 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 MORN4Q8NDC4 146 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 C17orf47Q8NEP4 570 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 OR52I2Q8NH67 350 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 DNAJB12Q9NXW2 375 aaKnown RBP13.65□□□□□ -0.22
CUX1-214ENST00000550008 DTX4Q9Y2E6 619 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 POM121CA8CG34 1229 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 GLULP15104 373 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 HTR2CP28335 458 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 CCL7P80098 99 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 LCN10Q6JVE6 187 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 METAP1DQ6UB28 335 aaPredicted RBP13.65□□□□□ -0.22
CUX1-214ENST00000550008 CCDC36Q8IYA8 594 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 MFSD4AQ8N468 514 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 BPIFB2Q8N4F0 458 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 OR5H2Q8NGV7 314 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 ASB17Q8WXJ9 295 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 SCGB3A2Q96PL1 93 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 NOX1Q9Y5S8 564 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 LILRA5A6NI73 299 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 RAD51DO75771 328 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 CRYZL1O95825 349 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 AKAIN1P0CW23 69 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 EVX1P49640 407 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 SLC36A2Q495M3 483 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 UBE2NLQ5JXB2 153 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 MOGAT1Q96PD6 335 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 ASH2LQ9UBL3 628 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 KCND3Q9UK17 655 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 DOCK8Q8NF50 2099 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 RALGAPA2Q2PPJ7 1873 aa13.65□□□□□ -0.22
CUX1-214ENST00000550008 A0A087WUJ7 227 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 IGHV3-15A0A0B4J1V0 119 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 A6NCN8 305 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 SLC33A1O00400 549 aaPredicted RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 EIF4E2O60573 245 aaKnown RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 SIX6O95475 246 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 DBHP09172 617 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 UQCRC1P31930 480 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 DCAF12Q5T6F0 453 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 GLB1L2Q8IW92 636 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 SPTSSAQ969W0 71 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 FAM3DQ96BQ1 224 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 BORCS8Q96FH0 119 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 ZNF845Q96IR2 970 aaPredicted RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 SEC22AQ96IW7 307 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 WWTR1Q9GZV5 400 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 EVA1AQ9H8M9 152 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 TREM1Q9NP99 234 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 UBQLN2Q9UHD9 624 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 SPTAN1Q13813 2472 aaKnown RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 OR6C68A6NDL8 312 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 PRICKLE3O43900 615 aaPredicted RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 IGHV4-34P06331 123 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 RAB40ALP0C0E4 278 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 ABCD3P28288 659 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 RRAS2P62070 204 aaPredicted RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 POU4F3Q15319 338 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 HLA-BQ31612 363 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 YIF1BQ5BJH7 314 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 RAB40AQ8WXH6 277 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 SLC7A6Q92536 515 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 MIB2Q96AX9 1013 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 ANKRD9Q96BM1 317 aaPredicted RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 ACKR4Q9NPB9 350 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 PLEKHJ1Q9NW61 149 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 PCNTO95613 3336 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 A0A1B0GV50 99 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 RNF4P78317 190 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 CD226Q15762 336 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 SMIM19Q96E16 107 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 CCNL2Q96S94 520 aaPredicted RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 SRRQ9GZT4 340 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 FLRT3Q9NZU0 649 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 OR52A1Q9UKL2 312 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 MTRF1O75570 445 aaKnown RBP13.64□□□□□ -0.23
CUX1-214ENST00000550008 HSF1Q00613 529 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 ELP2Q6IA86 826 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 DGAT2L6Q6ZPD8 337 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 TMPRSS11FQ6ZWK6 438 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 KIAA1958Q8N8K9 716 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 OR5H6Q8NGV6 325 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 CCDC74BQ96LY2 380 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 AUNIPQ9H7T9 357 aa13.64□□□□□ -0.23
CUX1-214ENST00000550008 TMPPEQ6ZT21 453 aa13.63□□□□□ -0.23
CUX1-214ENST00000550008 NEURL2Q9BR09 285 aa13.63□□□□□ -0.23
CUX1-214ENST00000550008 ENKD1Q9H0I2 346 aa13.63□□□□□ -0.23
CUX1-214ENST00000550008 MTCH2Q9Y6C9 303 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms