RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TENM3Q9P273 2699 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TENM2Q9NT68 2774 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 DSPPQ9NZW4 1301 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 NOTCH3Q9UM47 2321 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 TANC2Q9HCD6 1990 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 IGHV2-70DA0A0C4DH43 119 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 A0A0U1RQK1 487 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 LCE6AA0A183 80 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CLDN24A6NM45 220 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 A8MT66 165 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF99A8MXY4 864 aaPredicted RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 E7ESA3 106 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 NPIPB9F8W1W9 429 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 RPL36A-HNRNPH2H7BZ11 118 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF208O43345 1280 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 STX11O75558 287 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CRCPO75575 148 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 SEC31AO94979 1220 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 RPS17P08708 135 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 IFI6P09912 130 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 OR12D1P0DN82 309 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF250P15622 560 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 RPS2P15880 293 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 MATN1P21941 496 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CBLP22681 906 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 UQCRC2P22695 453 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ECHS1P30084 290 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 GABRA5P31644 462 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 STX2P32856 288 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 SOAT1P35610 550 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 PGM1P36871 562 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 IER3P46695 156 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 UCP2P55851 309 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 KRTAP10-11P60412 298 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 RPL15P61313 204 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 MRPS25P82663 173 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 TNFAIP6P98066 277 aaPredicted RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 DR1Q01658 176 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ZMYND11Q15326 602 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CHI3L2Q15782 390 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF141Q15928 474 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 TMEM95Q3KNT9 176 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 UNC50Q53HI1 259 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 PHYHD1Q5SRE7 291 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ATG16L1Q676U5 607 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 EMBQ6PCB8 327 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 C16orf62Q7Z3J2 963 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 LRRC28Q86X40 367 aaPredicted RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CLEC4FQ8N1N0 589 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 MUC20Q8N307 709 aaPredicted RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 PAQR4Q8N4S7 273 aaPredicted RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CPEB3Q8NE35 698 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 PIK3C3Q8NEB9 887 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 SLC30A7Q8NEW0 376 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 FGFBP3Q8TAT2 258 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ABHD4Q8TB40 342 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF519Q8TB69 540 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CNOT9Q92600 299 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 CLPTM1LQ96KA5 538 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 RHOXF2Q9BQY4 288 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 NUDT16L1Q9BRJ7 211 aaKnown RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 EMC6Q9BV81 110 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 DPH5Q9H2P9 285 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 PPA2Q9H2U2 334 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 DPAGT1Q9H3H5 408 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 DENND2DQ9H6A0 471 aaPredicted RBP3.97□□□□□ -1.77
LIMS1-214ENST00000542845 REEP4Q9H6H4 257 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 MID1IP1Q9NPA3 183 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 ACOXLQ9NUZ1 547 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 KIF17Q9P2E2 1029 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 RASD1Q9Y272 281 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 FAM96BQ9Y3D0 163 aa3.97□□□□□ -1.77
LIMS1-214ENST00000542845 NUP214P35658 2090 aaPredicted RBP3.96□□□□□ -1.77
LIMS1-214ENST00000542845 IGLV3-9A0A075B6K5 115 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 CENPVL3A0A0U1RRI6 287 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 KIR2DS1A0A191URI9 304 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 A0A1W2PRX2 142 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RBMY1BA6NDE4 496 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 BTBD17A6NE02 478 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RBMY1EA6NEQ0 496 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 NOTOA8MTQ0 251 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 E9PQ18 207 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 TNFRSF13BO14836 293 aaPredicted RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 TM9SF1O15321 606 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SLC16A6O15403 523 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SERPINI2O75830 405 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 TOX4O94842 621 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 UBL3O95164 117 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 VAMP5O95183 116 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SERPINA5P05154 406 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 GSTA1P08263 222 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 KRT16P08779 473 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 GSTA2P09210 222 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 WNT2P09544 360 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RBMY1DP0C7P1 496 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 PPIAL4GP0DN37 164 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 KITP10721 976 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 TAC1P20366 129 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 GTF2E2P29084 291 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 HOXD3P31249 432 aaPredicted RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms