RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ICA1LQ8NDH6 482 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 PYDC1Q8WXC3 89 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 NANOS1Q8WY41 292 aaKnown RBP13.11□□□□□ -0.31
CPSF1-208ENST00000532560 HDAC2Q92769 488 aaKnown RBP13.11□□□□□ -0.31
CPSF1-208ENST00000532560 NEUROG1Q92886 237 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 MCHR2Q969V1 340 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 KATNB1Q9BVA0 655 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 SMURF2Q9HAU4 748 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 TMEM38BQ9NVV0 291 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 TMCC3Q9ULS5 477 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 LYVE1Q9Y5Y7 322 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 IGHV1-18A0A0C4DH31 117 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF503-AS2A6NEH8 195 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 H3BNX3 289 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 OR10H3O60404 316 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 PTP4A3O75365 173 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 NDUFB2O95178 105 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 RAP2AP10114 183 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 CBR1P16152 277 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 HOXB6P17509 224 aaKnown RBP13.1□□□□□ -0.31
CPSF1-208ENST00000532560 FPR3P25089 353 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 ARR3P36575 388 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 RPL4P36578 427 aaKnown RBP13.1□□□□□ -0.31
CPSF1-208ENST00000532560 ACVR1BP36896 505 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 IFNGR2P38484 337 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 HMGA2P52926 109 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 FXYD6P3P58550 94 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 SLC22A25Q6T423 547 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 SPNS3Q6ZMD2 512 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 FAM122BQ7Z309 247 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 ADGRG5Q8IZF4 528 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 DEPDC4Q8N2C3 294 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 FNDC8Q8TC99 324 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 DUS3LQ96G46 650 aaKnown RBP13.1□□□□□ -0.31
CPSF1-208ENST00000532560 GPA33Q99795 319 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 B3GNT2Q9NY97 397 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF224Q9NZL3 707 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF346Q9UL40 294 aaKnown RBP13.1□□□□□ -0.31
CPSF1-208ENST00000532560 RAB26Q9ULW5 256 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 DSCAMO60469 2012 aa13.1□□□□□ -0.31
CPSF1-208ENST00000532560 DHRS12A0PJE2 317 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 DPPA5A6NC42 116 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 TNFRSF11BO00300 401 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 CECR9P0C854 216 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 DANCRP0C864 163 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 OR8G3PP0DMU2 310 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 CAPZA2P47755 286 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 PRRC2AP48634 2157 aaKnown RBP13.09□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF84P51523 738 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 MYBPC1Q00872 1141 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 CD47Q08722 323 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 TRIP10Q15642 601 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 OR2T5Q6IEZ7 315 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 PGBD2Q6P3X8 592 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 MDP1Q86V88 176 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 SLC22A24Q8N4F4 322 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 LINC00471Q8N535 108 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 ARIH2OSQ8N7S6 290 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 OR4C15Q8NGM1 316 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 OR2T29Q8NH02 315 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 FANK1Q8TC84 345 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 NRIP3Q9NQ35 241 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 FAIMQ9NVQ4 179 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 CISD1Q9NZ45 108 aaKnown RBP13.09□□□□□ -0.31
CPSF1-208ENST00000532560 NDUFA13Q9P0J0 144 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 POU2F3Q9UKI9 436 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 ADAM18Q9Y3Q7 739 aa13.09□□□□□ -0.31
CPSF1-208ENST00000532560 ATP6V1G2-DDX39BF2Z307 99 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 DENRO43583 198 aaKnown RBP13.08□□□□□ -0.32
CPSF1-208ENST00000532560 AHCYL1O43865 530 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 SMPD2O60906 423 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 UBL3O95164 117 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 FARS2O95363 451 aaKnown RBP13.08□□□□□ -0.32
CPSF1-208ENST00000532560 SLC2A10O95528 541 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 HLA-HP01893 362 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 LYNP07948 512 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 CD79AP11912 226 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 SDHAP31040 664 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 GSSP48637 474 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 IDH3GP51553 393 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-208ENST00000532560 ERVK-25P63136 954 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 NAAAQ02083 359 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 FMODQ06828 376 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 GK3PQ14409 553 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 GSG1Q2KHT4 349 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 PGGHGQ32M88 737 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 MESTQ5EB52 335 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 THEM4Q5T1C6 240 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 GPR139Q6DWJ6 353 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 C1orf94Q6P1W5 598 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 SLC25A47Q6Q0C1 308 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 SMARCD3Q6STE5 483 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 B3GLCTQ6Y288 498 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 THSD4Q6ZMP0 1018 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 DPPA2Q7Z7J5 298 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 DTX2Q86UW9 622 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 LRRC75A-AS1Q8N1F1 130 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 SMAP2Q8WU79 429 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-208ENST00000532560 TMEM171Q8WVE6 324 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 CANT1Q8WVQ1 401 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms