RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 HIST1H2ABP04908 130 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 CD79AP11912 226 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 CCL2P13500 99 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 TCN1P20061 433 aaPredicted RBP9.18□□□□□ -0.94
CD44-227ENST00000528086 NR4A1P22736 598 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 PTDSS1P48651 473 aaKnown RBP9.18□□□□□ -0.94
CD44-227ENST00000528086 EFNA4P52798 201 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 ETFDHQ16134 617 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 KRTAP21-3Q3LHN1 58 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 ALG10Q5BKT4 473 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 KRT80Q6KB66 452 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.18□□□□□ -0.94
CD44-227ENST00000528086 FOXL2NBQ6ZUU3 175 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 TMPRSS11FQ6ZWK6 438 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 HIST3H2AQ7L7L0 130 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 PIWIL3Q7Z3Z3 882 aaKnown RBP9.18□□□□□ -0.94
CD44-227ENST00000528086 PGAM4Q8N0Y7 254 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 DEPDC4Q8N2C3 294 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 SVOPLQ8N434 492 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 OR4F15Q8NGB8 312 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 C10orf105Q8TEF2 133 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 LZICQ8WZA0 190 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 HIST1H2ACQ93077 130 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 FAM162AQ96A26 154 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 CDRT15Q96T59 188 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 FNDC11Q9BVV2 318 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 MRPL37Q9BZE1 423 aaKnown RBP9.18□□□□□ -0.94
CD44-227ENST00000528086 B3GAT2Q9NPZ5 323 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 TAGLN3Q9UI15 199 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 ADAM21Q9UKJ8 722 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 ADAM18Q9Y3Q7 739 aa9.18□□□□□ -0.94
CD44-227ENST00000528086 A0A1W2PRG6 482 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 A0A1W2PRQ8 180 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 CENPBD1B2RD01 187 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 ARPC2O15144 300 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 GSTA4O15217 222 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 PDE5AO76074 875 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 F12P00748 615 aaPredicted RBP9.17□□□□□ -0.94
CD44-227ENST00000528086 SERPINA5P05154 406 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 OR8G3PP0DMU2 310 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 ATP6V1B2P21281 511 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 CAPZA2P47755 286 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 NUDT6P53370 316 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 CTXN1P60606 82 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 RPL27P61353 136 aaKnown RBP9.17□□□□□ -0.94
CD44-227ENST00000528086 ERVS71-1P61550 626 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 ERVK-25P63136 954 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 SNTB2Q13425 540 aaKnown RBP9.17□□□□□ -0.94
CD44-227ENST00000528086 TOP3AQ13472 1001 aaPredicted RBP9.17□□□□□ -0.94
CD44-227ENST00000528086 DGCR6Q14129 220 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 MESTQ5EB52 335 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 OTPQ5XKR4 325 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 UGT2A3Q6UWM9 527 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 FKBP9P1Q75LS8 142 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 ZER1Q7Z7L7 766 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 RNF113BQ8IZP6 322 aaKnown RBP9.17□□□□□ -0.94
CD44-227ENST00000528086 FAM46AQ96IP4 442 aaKnown RBP9.17□□□□□ -0.94
CD44-227ENST00000528086 Q96M85 177 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 ADA2Q9NZK5 511 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 SIGLEC7Q9Y286 467 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 V9GYQ6 96 aa9.17□□□□□ -0.94
CD44-227ENST00000528086 LOC100509620A0A075B734 347 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 TCRBV5S2A0A599 114 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 EFCAB9A8MZ26 197 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 B9A039 149 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 H7C1C5 153 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 UBL3O95164 117 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 H1F0P07305 194 aaKnown RBP9.16□□□□□ -0.94
CD44-227ENST00000528086 RHCEP18577 417 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 NPR2P20594 1047 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 PAX7P23759 505 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 PCSK6P29122 969 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 DAP3P51398 398 aaKnown RBP9.16□□□□□ -0.94
CD44-227ENST00000528086 CLRN1P58418 232 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 LCN6P62502 163 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 MRPS34P82930 218 aaKnown RBP9.16□□□□□ -0.94
CD44-227ENST00000528086 MS4A2Q01362 244 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 DAG1Q14118 895 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 ENDOGQ14249 297 aaKnown RBP9.16□□□□□ -0.94
CD44-227ENST00000528086 KRT72Q14CN4 511 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 RAB35Q15286 201 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 ZNF730Q6ZMV8 503 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 RINLQ6ZS11 566 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 PTCHD4Q6ZW05 846 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 DEFB107AQ8IZN7 70 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 LRRC18Q8N456 261 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 ARIH2OSQ8N7S6 290 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 NSMAFQ92636 917 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 PYURFQ96I23 114 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 LRRC37BQ96QE4 947 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 SOX7Q9BT81 388 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 ANKRD19PQ9H560 264 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 BARX1Q9HBU1 254 aaPredicted RBP9.16□□□□□ -0.94
CD44-227ENST00000528086 VNN3Q9NY84 501 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 FZR1Q9UM11 496 aa9.16□□□□□ -0.94
CD44-227ENST00000528086 IGHV4-61A0A0C4DH41 118 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 SLC22A23A1A5C7 686 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 SH3PXD2BA1X283 911 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 HTR3EA5X5Y0 456 aa9.15□□□□□ -0.94
CD44-227ENST00000528086 LYNX1G3V0Z9 82 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms