RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 INTS12Q96CB8 462 aaKnown RBP18.68■□□□□ 0.58
VPS28-208ENST00000527797 NMD3Q96D46 503 aaKnown RBP18.68■□□□□ 0.58
VPS28-208ENST00000527797 FOXN4Q96NZ1 517 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 PRRG4Q9BZD6 226 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 WDR76Q9H967 626 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 KLHL9Q9P2J3 617 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 CAMK2AQ9UQM7 478 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 TP53TG5Q9Y2B4 290 aa18.68■□□□□ 0.58
VPS28-208ENST00000527797 IGKV1D-43A0A0B4J1Z2 117 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 CCRL2O00421 344 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 PTGS2P35354 604 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 CSNK1A1P48729 337 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 PLEKHN1Q494U1 663 aaPredicted RBP18.67■□□□□ 0.58
VPS28-208ENST00000527797 P2RY8Q86VZ1 359 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 CDC20BQ86Y33 519 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 SIAH3Q8IW03 269 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 RNF128Q8TEB7 428 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 RAB2BQ8WUD1 216 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ISG20L2Q9H9L3 353 aaKnown RBP18.67■□□□□ 0.58
VPS28-208ENST00000527797 GLTPQ9NZD2 209 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ENPP5Q9UJA9 477 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 COPS3Q9UNS2 423 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 LHX6Q9UPM6 363 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 RCE1Q9Y256 329 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 DCHS1Q96JQ0 3298 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ZNF593O00488 134 aaPredicted RBP18.67■□□□□ 0.58
VPS28-208ENST00000527797 AQP7O14520 342 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ZNF432O94892 652 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 MT-ND5P03915 603 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 QDPRP09417 244 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 CAPZA2P47755 286 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ACTA2P62736 377 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ACTG2P63267 376 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ACSM1Q08AH1 577 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 SLC25A47Q6Q0C1 308 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 SSX6Q7RTT6 188 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 AAED1Q7RTV5 226 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 GLB1L2Q8IW92 636 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 TMEM123Q8N131 208 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ABHD3Q8WU67 409 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 SNX33Q8WV41 574 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 TMEM54Q969K7 222 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 MCHR2Q969V1 340 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 ZNF775Q96BV0 537 aaPredicted RBP18.67■□□□□ 0.58
VPS28-208ENST00000527797 MRPL22Q9NWU5 206 aaKnown RBP18.67■□□□□ 0.58
VPS28-208ENST00000527797 BABAM2Q9NXR7 383 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 TMEM14AQ9Y6G1 99 aa18.67■□□□□ 0.58
VPS28-208ENST00000527797 IGKV3D-15A0A087WSY6 115 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 TAF4O00268 1085 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 GPR171O14626 319 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 CRYABP02511 175 aaKnown RBP18.66■□□□□ 0.58
VPS28-208ENST00000527797 SELENOPP49908 381 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 CNPY1Q3B7I2 92 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 UNQ6494/PRO21346Q6UXR6 183 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 FNDC9Q8TBE3 224 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 SARAFQ96BY9 339 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 C12orf43Q96C57 262 aaKnown RBP18.66■□□□□ 0.58
VPS28-208ENST00000527797 DOK1Q99704 481 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 PLSCR2Q9NRY7 297 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 LAMP5Q9UJQ1 280 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 PIEZO1Q92508 2521 aa18.66■□□□□ 0.58
VPS28-208ENST00000527797 J3QLW9 94 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 PHYHO14832 338 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 SLC43A1O75387 559 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 ZNF823P16415 610 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 ZNF19P17023 458 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 LAP3P28838 519 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 ENTPD1P49961 510 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 ADAM8P78325 824 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 CDONQ4KMG0 1287 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 LRFN4Q6PJG9 635 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 DPY19L4Q7Z388 723 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.65■□□□□ 0.58
VPS28-208ENST00000527797 KLBQ86Z14 1044 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 C20orf196Q8IYI0 205 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 SYS1Q8N2H4 156 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 RFLNBQ8N5W9 214 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 SLC26A10Q8NG04 563 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 TMEM45BQ96B21 275 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 C4orf36Q96KX1 117 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 PRDM14Q9GZV8 571 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 EMC3Q9P0I2 261 aa18.65■□□□□ 0.58
VPS28-208ENST00000527797 ING1Q9UK53 422 aaPredicted RBP18.65■□□□□ 0.58
VPS28-208ENST00000527797 TNRC6AQ8NDV7 1962 aaKnown RBP18.65■□□□□ 0.58
VPS28-208ENST00000527797 URB1O60287 2271 aaKnown RBP18.65■□□□□ 0.58
VPS28-208ENST00000527797 AQP8O94778 261 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 MPZL1O95297 269 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 HRGP04196 525 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 GAAP10253 952 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 CPEP16870 476 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 OR12D2P58182 307 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 BDH1Q02338 343 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 TPBGQ13641 420 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 RNPS1Q15287 305 aaKnown RBP18.64■□□□□ 0.57
VPS28-208ENST00000527797 SSX1Q16384 188 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 SLC16A12Q6ZSM3 486 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 OTOSQ8NHW6 89 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 UFD1Q92890 307 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 BCL7BQ9BQE9 202 aa18.64■□□□□ 0.57
VPS28-208ENST00000527797 TTTY10Q9BZA0 68 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms