RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 GTSCR1Q86UQ5 136 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 SNX32Q86XE0 403 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 C9orf40Q8IXQ3 194 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 DND1Q8IYX4 353 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 CLEC4FQ8N1N0 589 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 ZADH2Q8N4Q0 377 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 TMEM156Q8N614 296 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 TRIML2Q8N7C3 387 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 CDRT4Q8N9R6 151 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 OR4A15Q8NGL6 344 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 C9orf43Q8TAL5 461 aaPredicted RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 FAM110BQ8TC76 370 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 SLC22A8Q8TCC7 542 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 MIPOL1Q8TD10 442 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 GTF2H4Q92759 462 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 CMTM5Q96DZ9 223 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 NEURL3Q96EH8 262 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 GIMAP5Q96F15 307 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 C16orf58Q96GQ5 468 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 NSL1Q96IY1 281 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 MS4A4EQ96PG1 132 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 BTBD9Q96Q07 612 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 PANX1Q96RD7 426 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 RASL10BQ96S79 203 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 STACQ99469 402 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 UTP23Q9BRU9 249 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 SLC35A5Q9BS91 424 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 FNDC11Q9BVV2 318 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 TRIM15Q9C019 465 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 NXF5Q9H1B4 397 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 WDR13Q9H1Z4 485 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 PIGUQ9H490 435 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 LIN28AQ9H9Z2 209 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 EFCAB1Q9HAE3 211 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 TPT1P8Q9HAU6 139 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 EQTNQ9NQ60 294 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 ZCCHC3Q9NUD5 404 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 HAO2Q9NYQ3 351 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 SLC25A37Q9NYZ2 338 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 PTTG2Q9NZH5 202 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 ARMCX1Q9P291 453 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 LEF1Q9UJU2 399 aaPredicted RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 MRTO4Q9UKD2 239 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 SLC7A7Q9UM01 511 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 GMEB1Q9Y692 573 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 SMAD5-AS1Q9Y6J3 95 aa2.79□□□□□ -1.96
VPS13B-209ENST00000521559 CNOT1A5YKK6 2376 aaKnown RBP2.79□□□□□ -1.96
VPS13B-209ENST00000521559 ZFC3H1O60293 1989 aaKnown RBP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 C15orf38-AP3S2A0A0A6YYH1 394 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 TRAV17A0A0B4J275 112 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 A0A0J9YWU9 116 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 RNF103-CHMP3A0A140T963 221 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 MEIOCA2RUB1 952 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 OR5H15A6NDH6 313 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 OR6C70A6NIJ9 312 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 CCT8L1PA6NM43 557 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 A8MXE2 369 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 EVPLLA8MZ36 301 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 PRR32B1ATL7 298 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 TP53I11O14683 189 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 MRASO14807 208 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 AIM2O14862 343 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 TSPAN2O60636 221 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 DPM1O60762 260 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 ZNF354AO60765 605 aaPredicted RBP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 REM1O75628 298 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 OR6B1O95007 311 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 KCNK2O95069 426 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 AK1P00568 194 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 C1QCP02747 245 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 GUSBP08236 651 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 TFPTP0C1Z6 253 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 OR12D1P0DN82 309 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 GPX2P18283 190 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 CNR1P21554 472 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 CPT2P23786 658 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 LCN1P31025 176 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 CHI3L1P36222 383 aaPredicted RBP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 SOX3P41225 446 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 SLC9A3P48764 834 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 CYB561P49447 251 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 CLK1P49759 484 aaKnown RBP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 KHKP50053 298 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 SSR4P51571 173 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 BMXP51813 675 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 FBXW4P57775 412 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 RPP38P78345 283 aaKnown RBP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 ARG2P78540 354 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 ART3Q13508 389 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 RGNQ15493 299 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 OR1C1Q15619 314 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 NNATQ16517 81 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 ARHGAP11BQ3KRB8 267 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 GTDC1Q4AE62 458 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 LACTB2Q53H82 288 aaPredicted RBP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 FFAR4Q5NUL3 377 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.78□□□□□ -1.96
VPS13B-209ENST00000521559 ATAD3BQ5T9A4 648 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 AP1ARQ63HQ0 302 aa2.78□□□□□ -1.96
VPS13B-209ENST00000521559 SLC22A10Q63ZE4 541 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 287.1 ms