RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CD80P33681 288 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 UGT1A3P35503 534 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 HTR5AP47898 357 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 EFNA3P52797 238 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 UCNP55089 124 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 DR1Q01658 176 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 PAX5Q02548 391 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 IRF8Q02556 426 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 SRYQ05066 204 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 PSG7Q13046 419 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 SLC39A6Q13433 755 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 RCAN2Q14206 197 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 GK3PQ14409 553 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 HSP90AA4PQ58FG1 418 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 OTPQ5XKR4 325 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 ZNF562Q6V9R5 426 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 P4HA3Q7Z4N8 544 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 NET1Q7Z628 596 aaPredicted RBP3.72□□□□□ -1.81
SF3B1-212ENST00000496458 DHDDSQ86SQ9 333 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 PLA2G4DQ86XP0 818 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 LRRC8AQ8IWT6 810 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 C9orf40Q8IXQ3 194 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 MFSD9Q8NBP5 474 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 DYDC1Q8WWB3 177 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 NRGNQ92686 78 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 CDKL2Q92772 493 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 ELSPBP1Q96BH3 223 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 TEKT3Q9BXF9 490 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 HES7Q9BYE0 225 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 NAT10Q9H0A0 1025 aaKnown RBP3.72□□□□□ -1.81
SF3B1-212ENST00000496458 GAL3ST2Q9H3Q3 398 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 AZI2Q9H6S1 392 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 PARVBQ9HBI1 364 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 SLC40A1Q9NP59 571 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 C1orf123Q9NWV4 160 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 MTCH1Q9NZJ7 389 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 UTRNP46939 3433 aa3.72□□□□□ -1.81
SF3B1-212ENST00000496458 NHSQ6T4R5 1651 aa3.71□□□□□ -1.81
SF3B1-212ENST00000496458 SCN11AQ9UI33 1791 aa3.71□□□□□ -1.81
SF3B1-212ENST00000496458 TOGARAM1Q9Y4F4 1720 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PDZK1P1A8MUH7 402 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 NPIPA7E9PJI5 369 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 WWP2O00308 870 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 OR7A17O14581 309 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PFDN1O60925 122 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 B3GAT3O94766 335 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 HSMCR30P0CW71 290 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 NPIPA8P0DM63 369 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 ATP1B2P14415 290 aaPredicted RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PLP1P60201 277 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 OSTNP61366 133 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 ILKQ13418 452 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 NCF4Q15080 339 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 ANGPT1Q15389 498 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 NDUFA5Q16718 116 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 BEX5Q5H9J7 111 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 KHDRBS2Q5VWX1 349 aaKnown RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 UFSP1Q6NVU6 142 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 KRTAP5-5Q701N2 237 aaPredicted RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 SMIM5Q71RC9 77 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 Q7L0L9 218 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 COPS6Q7L5N1 327 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 ACOT1Q86TX2 421 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 ST13P4Q8IZP2 240 aaPredicted RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 DNAAF3Q8N9W5 541 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 FNDC5Q8NAU1 212 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 OR1F12Q8NHA8 337 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 RHEBL1Q8TAI7 183 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 RNF138Q8WVD3 245 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 MTMR9Q96QG7 549 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PLEKHF1Q96S99 279 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 BBS2Q9BXC9 721 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 FRMD8P1Q9BZ68 369 aaPredicted RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 RANBP3Q9H6Z4 567 aaPredicted RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 MEPEQ9NQ76 525 aaPredicted RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 POLE4Q9NR33 117 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PNO1Q9NRX1 252 aaKnown RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 ELOVL2Q9NXB9 296 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 MTRF1LQ9UGC7 380 aaKnown RBP3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PITPNC1Q9UKF7 332 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 STAP1Q9ULZ2 295 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 FZR1Q9UM11 496 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 NPIPA1Q9UND3 350 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 POLDIP2Q9Y2S7 368 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 DHRS7Q9Y394 339 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 FADS3Q9Y5Q0 445 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 FKBP7Q9Y680 259 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 NOTCH2Q04721 2471 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 PALLDQ8WX93 1383 aa3.71□□□□□ -1.82
SF3B1-212ENST00000496458 UBN2Q6ZU65 1347 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 KDM6AO15550 1401 aaPredicted RBP3.7□□□□□ -1.82
SF3B1-212ENST00000496458 NUP188Q5SRE5 1749 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 IQANK1A0A1B0GTG1 560 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 GSTTP1A0A1W2PQM5 241 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 ANKRD65E5RJM6 399 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 IMPA2O14732 288 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 EIF3HO15372 352 aaKnown RBP eCLIP3.7□□□□□ -1.827e-7■■□□□ 13.5
SF3B1-212ENST00000496458 LATO43561 262 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 KDELR3O43731 214 aa3.7□□□□□ -1.82
SF3B1-212ENST00000496458 HCN1O60741 890 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms