RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SLC6A1P30531 599 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SOX18P35713 384 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GNALP38405 381 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GZMMP51124 257 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FAM74A3Q4VXF1 159 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 C14orf28Q4W4Y0 310 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 LAMTOR1Q6IAA8 161 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TCEAL6Q6IPX3 200 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC35D2Q76EJ3 337 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HSD17B13Q7Z5P4 300 aaPredicted RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC35F3Q8IY50 421 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF321PQ8N8H1 164 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MFSD8Q8NHS3 518 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 DAZLQ92904 295 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 NXF5Q9H1B4 397 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CHST8Q9H2A9 424 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TMEM231Q9H6L2 316 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 A4GALTQ9NPC4 353 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 DTX4Q9Y2E6 619 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CBY1Q9Y3M2 126 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 COL6A6A6NMZ7 2263 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 AKAP6Q13023 2319 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TRBV2A0A0J9YWF9 115 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PRAMEF27A3QJZ7 478 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TRIM77I1YAP6 450 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TBX6O95947 436 aaPredicted RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 JMJD7P0C870 316 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FOLR1P15328 257 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CD34P28906 385 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 S100A10P60903 97 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PDE7AQ13946 482 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.82□□□□□ -0.843e-10■□□□□ 10.2
MSH5-SAPCD1-207ENST00000493662 GUSBP11Q6P575 273 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 BPIFCQ8NFQ6 507 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MAFAQ8NHW3 353 aaPredicted RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 VOPP1Q96AW1 172 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RASD2Q96D21 266 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TCTN2Q96GX1 697 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZC3HAV1LQ96H79 300 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HS6ST2Q96MM7 605 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GSKIPQ9P0R6 139 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF346Q9UL40 294 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GP1BBP13224 206 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RAD52P43351 418 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MTNR1BP49286 362 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PPT1P50897 306 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CCR9P51686 369 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PCBP4P57723 403 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RAB38P57729 211 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HLXQ14774 488 aaPredicted RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC6A19Q695T7 634 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HEPHL1Q6MZM0 1159 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 UNQ6126/PRO20091Q6UXV3 157 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ESPNLQ6ZVH7 1005 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CBLN2Q8IUK8 224 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 YIPF5Q969M3 257 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GPA33Q99795 319 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ATF6BQ99941 703 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC25A18Q9H1K4 315 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC25A32Q9H2D1 315 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PRODH2Q9UF12 536 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GPR31O00270 319 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GDF9O60383 454 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 LY86O95711 162 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 WNT1P04628 370 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 EIF4EP06730 217 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CAPZBP47756 277 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 EMP2P54851 167 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FXYD6P3P58550 94 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TRA2BP62995 288 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HSD11B2P80365 405 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RIN1Q13671 783 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SYT14P1Q58G82 188 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF628Q5EBL2 1059 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC25A24Q6NUK1 477 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GALNTL5Q7Z4T8 443 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 COMTD1Q86VU5 262 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TMPRSS12Q86WS5 348 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SEC22AQ96IW7 307 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 LPAR4Q99677 370 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR11A1Q9GZK7 315 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 METTL8Q9H825 291 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 B3GAT2Q9NPZ5 323 aa9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PTRH2Q9Y3E5 179 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GGT3PA6NGU5 568 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ACOT7O00154 380 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 HRO43593 1189 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 TPT1P13693 172 aaKnown RBP9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 IFNGR1P15260 489 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CPT2P23786 658 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 SLC6A6P31641 620 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CRYBA2P53672 197 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR2B8PP59922 312 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 UBE2MP61081 183 aaKnown RBP9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF616Q08AN1 781 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 C5orf46Q6UWT4 87 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ATCAYQ86WG3 371 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GPR119Q8TDV5 335 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZNF649Q9BS31 505 aa9.81□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 G6PC3Q9BUM1 346 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms