RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CDH12P55289 794 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 RGS8P57771 180 aaPredicted RBP11.81□□□□□ -0.52
VARS-227ENST00000489979 PLP2Q04941 152 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 SLC3A1Q07837 685 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 BST1Q10588 318 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 ZNF154Q13106 437 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 FADDQ13158 208 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 MELKQ14680 651 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 SLC36A2Q495M3 483 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 TMEM255AQ5JRV8 349 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 NXNQ6DKJ4 435 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 LEG1Q6P5S2 330 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 MSANTD1Q6ZTZ1 278 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 DPPA2Q7Z7J5 298 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 RBM15BQ8NDT2 890 aaKnown RBP11.81□□□□□ -0.52
VARS-227ENST00000489979 NFKBIDQ8NI38 313 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 ZNF566Q969W8 418 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 SLC25A28Q96A46 364 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 WFDC6Q9BQY6 131 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 TMEM43Q9BTV4 400 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 RAD21L1Q9H4I0 556 aa11.81□□□□□ -0.52
VARS-227ENST00000489979 TESQ9UGI8 421 aaKnown RBP11.81□□□□□ -0.52
VARS-227ENST00000489979 TRAPPC2LH3BP13 241 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 TM9SF1O15321 606 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 MT-ATP6P00846 226 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 QDPRP09417 244 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 MDKP21741 143 aaPredicted RBP11.8□□□□□ -0.52
VARS-227ENST00000489979 CCNOP22674 350 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 APLNRP35414 380 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 MPV17P39210 176 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 MMP15P51511 669 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 SLC9A3R2Q15599 337 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 ZNF718Q3SXZ3 478 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 CEP85LQ5SZL2 805 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 SPATA46Q5T0L3 261 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 THEM4Q5T1C6 240 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 SYT14Q8NB59 555 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 OR9I1Q8NGQ6 314 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 IPCEF1Q8WWN9 437 aaPredicted RBP11.8□□□□□ -0.52
VARS-227ENST00000489979 GEMIN6Q8WXD5 167 aaKnown RBP11.8□□□□□ -0.52
VARS-227ENST00000489979 GTF2H4Q92759 462 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 SLC25A44Q96H78 314 aaPredicted RBP11.8□□□□□ -0.52
VARS-227ENST00000489979 EGLN1Q9GZT9 426 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 PAIP1Q9H074 479 aaKnown RBP11.8□□□□□ -0.52
VARS-227ENST00000489979 NPHS2Q9NP85 383 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 ZIM2Q9NZV7 527 aa11.8□□□□□ -0.52
VARS-227ENST00000489979 PLSCR5A0PG75 271 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 ZSCAN5BA6NJL1 495 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 TRPC5OSA6NMA1 111 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 CLDN34H7C241 214 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 HDAC3O15379 428 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 RNF13O43567 381 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 IGHMP01871 453 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 MMP7P09237 267 aaPredicted RBP11.79□□□□□ -0.52
VARS-227ENST00000489979 SBK2P0C263 348 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 PGA4P0DJD7 388 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 PGA3P0DJD8 388 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 KITP10721 976 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 ZNF12P17014 697 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 GCH1P30793 250 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 POLR2JP52435 117 aaKnown RBP11.79□□□□□ -0.52
VARS-227ENST00000489979 HSF2Q03933 536 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 MPP2Q14168 576 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 SPRNQ5BIV9 151 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 GCNT6Q5T4J0 391 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 KRT73Q86Y46 540 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 LRRC18Q8N456 261 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 CPEB3Q8NE35 698 aaKnown RBP11.79□□□□□ -0.52
VARS-227ENST00000489979 DCLRE1CQ96SD1 692 aaKnown RBP11.79□□□□□ -0.52
VARS-227ENST00000489979 SPATA5L1Q9BVQ7 753 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 SSU72Q9NP77 194 aaKnown RBP11.79□□□□□ -0.52
VARS-227ENST00000489979 DCAF16Q9NXF7 216 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 TAS2R5Q9NYW4 299 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 SLC13A4Q9UKG4 626 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 POLR3KQ9Y2Y1 108 aaPredicted RBP11.79□□□□□ -0.52
VARS-227ENST00000489979 INSIG2Q9Y5U4 225 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 NPTNQ9Y639 398 aa11.79□□□□□ -0.52
VARS-227ENST00000489979 CH25HO95992 272 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 IGHV2-70P01814 119 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 HOXB9P17482 250 aaPredicted RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 OMGP23515 440 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 RBMXP38159 391 aaKnown RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 WNT5AP41221 380 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 CLRN1P58418 232 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 SEC61A1P61619 476 aaKnown RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 CDK6Q00534 326 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 ZNF74Q16587 644 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 OCLNQ16625 522 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 NRN1LQ496H8 165 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 PABPC1L2AQ5JQF8 200 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 SWT1Q5T5J6 900 aaKnown RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 REEP3Q6NUK4 255 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 SLC2A7Q6PXP3 512 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 JAZF1Q86VZ6 243 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 ZNF101Q8IZC7 436 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 C10orf111Q8N326 155 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 SLC25A40Q8TBP6 338 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 MCHR2Q969V1 340 aa11.78□□□□□ -0.52
VARS-227ENST00000489979 MARS2Q96GW9 593 aaKnown RBP11.78□□□□□ -0.52
VARS-227ENST00000489979 ZNF347Q96SE7 839 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms