RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	PUDP	Q08623	228 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	COX10	Q12887	443 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PPP1R8	Q12972	351 aa	Known RBP	7.68	□□□□□ -1.18
USP4-213	ENST00000488520	IQCC	Q4KMZ1	466 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	WDR88	Q6ZMY6	472 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	TMPRSS11F	Q6ZWK6	438 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	AAED1	Q7RTV5	226 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	HDDC2	Q7Z4H3	204 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	TSEN54	Q7Z6J9	526 aa	Known RBP	7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PXK	Q7Z7A4	578 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	AMIGO2	Q86SJ2	522 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	TSPYL5	Q86VY4	417 aa	Predicted RBP	7.68	□□□□□ -1.18
USP4-213	ENST00000488520	TUSC5	Q8IXB3	177 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	UBE2J2	Q8N2K1	259 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	SVOPL	Q8N434	492 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	ICA1L	Q8NDH6	482 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	ADPRHL1	Q8NDY3	354 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	OR10G2	Q8NGC3	310 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	OR51A7	Q8NH64	312 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	NEUROG1	Q92886	237 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	SLCO4A1	Q96BD0	722 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	TRMT61A	Q96FX7	289 aa	Known RBP	7.68	□□□□□ -1.18
USP4-213	ENST00000488520	DHRS1	Q96LJ7	313 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	TNFRSF13C	Q96RJ3	184 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF426	Q9BUY5	554 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	PTDSS2	Q9BVG9	487 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	SEMA6A	Q9H2E6	1030 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	COQ10B	Q9H8M1	238 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	MEPE	Q9NQ76	525 aa	Predicted RBP	7.68	□□□□□ -1.18
USP4-213	ENST00000488520	UPB1	Q9UBR1	384 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	NOX1	Q9Y5S8	564 aa		7.68	□□□□□ -1.18
USP4-213	ENST00000488520	OR6C65	A6NJZ3	312 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF724	A8MTY0	619 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	FTCDNL1	E5RQL4	147 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	LRRN3	E7EW58	273 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	MS4A18	H0YCH9	400 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	SMAD9	O15198	467 aa	Known RBP	7.67	□□□□□ -1.18
USP4-213	ENST00000488520	TLX2	O43763	284 aa	Predicted RBP	7.67	□□□□□ -1.18
USP4-213	ENST00000488520	CD5L	O43866	347 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	PIP5K1C	O60331	668 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	NDUFS7	O75251	213 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	BCL10	O95999	233 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	MAK	P20794	623 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	GUCA1A	P43080	201 aa	Predicted RBP	7.67	□□□□□ -1.18
USP4-213	ENST00000488520	GPR4	P46093	362 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	CTXN1	P60606	82 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	H3F3A	P84243	136 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ZP4	Q12836	540 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	FAP	Q12884	760 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	TSPAN31	Q12999	210 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	SEC23B	Q15437	767 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	MS4A18	Q3C1V0	323 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	CHRFAM7A	Q494W8	412 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ALG10	Q5BKT4	473 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	RPL13AP3	Q6NVV1	102 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	C1orf94	Q6P1W5	598 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	SHQ1	Q6PI26	577 aa	Known RBP	7.67	□□□□□ -1.18
USP4-213	ENST00000488520	STAC2	Q6ZMT1	411 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ZER1	Q7Z7L7	766 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	KDM8	Q8N371	416 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	LRRC17	Q8N6Y2	441 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	AQP11	Q8NBQ7	271 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	OR52L1	Q8NGH7	329 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	RNF128	Q8TEB7	428 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ABHD3	Q8WU67	409 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	LIPH	Q8WWY8	451 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	MOGAT1	Q96PD6	335 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	FEV	Q99581	238 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	KRTAP4-12	Q9BQ66	201 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	OSBPL10	Q9BXB5	764 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ACTR6	Q9GZN1	396 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	DCLRE1B	Q9H816	532 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	B3GAT2	Q9NPZ5	323 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	INIP	Q9NRY2	104 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	MAN2C1	Q9NTJ4	1040 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	C20orf141	Q9NUB4	165 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	STX18	Q9P2W9	335 aa	Known RBP	7.67	□□□□□ -1.18
USP4-213	ENST00000488520	GRHPR	Q9UBQ7	328 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	ENOPH1	Q9UHY7	261 aa		7.67	□□□□□ -1.18
USP4-213	ENST00000488520	LOC102725191	A0A1B0GVB3	256 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520		A8MV72	311 aa	Predicted RBP	7.66	□□□□□ -1.18
USP4-213	ENST00000488520		H3BN98	237 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520		H3BS24	57 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	XKRY	O14609	159 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	GPRIN2	O60269	458 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	SS18L1	O75177	396 aa	Predicted RBP	7.66	□□□□□ -1.18
USP4-213	ENST00000488520	SLC43A1	O75387	559 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	NDUFB2	O95178	105 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	SOD3	P08294	240 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	ASAH2B	P0C7U1	165 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	CDH2	P19022	906 aa	Predicted RBP	7.66	□□□□□ -1.18
USP4-213	ENST00000488520	PRKACG	P22612	351 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	FPR3	P25089	353 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	POU1F1	P28069	291 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	SLC6A6	P31641	620 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	AQP2	P41181	271 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	OMP	P47874	163 aa		7.66	□□□□□ -1.18
USP4-213	ENST00000488520	DAP3	P51398	398 aa	Known RBP	7.66	□□□□□ -1.18
USP4-213	ENST00000488520	RPS6KA3	P51812	740 aa		7.66	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms