RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KCNK17Q96T54 332 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 MNTQ99583 582 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 SLIRPQ9GZT3 109 aaKnown RBP12.67□□□□□ -0.38
CUX1-209ENST00000487284 TSPAN10Q9H1Z9 355 aaPredicted RBP12.67□□□□□ -0.38
CUX1-209ENST00000487284 SIAEQ9HAT2 523 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 EXOSC4Q9NPD3 245 aaKnown RBP12.67□□□□□ -0.38
CUX1-209ENST00000487284 CCDC59Q9P031 241 aaKnown RBP12.67□□□□□ -0.38
CUX1-209ENST00000487284 LUZP4Q9P127 313 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 KLHL13Q9P2N7 655 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 TUBD1Q9UJT1 453 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 COPS3Q9UNS2 423 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 LHX6Q9UPM6 363 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 B3GNT3Q9Y2A9 372 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 ZNF407Q9C0G0 2248 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 ATRXP46100 2492 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 ZNF814B7Z6K7 855 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 ACOT7O00154 380 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 CD53P19397 219 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 FGF9P31371 208 aaPredicted RBP12.66□□□□□ -0.38
CUX1-209ENST00000487284 PPIAP62937 165 aaKnown RBP12.66□□□□□ -0.38
CUX1-209ENST00000487284 H3F3AP84243 136 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 RUNX1T1Q06455 604 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 PLEKHN1Q494U1 663 aaPredicted RBP12.66□□□□□ -0.38
CUX1-209ENST00000487284 WIPI1Q5MNZ9 446 aaPredicted RBP12.66□□□□□ -0.38
CUX1-209ENST00000487284 SLC22A16Q86VW1 577 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 CDC20BQ86Y33 519 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 UEVLDQ8IX04 471 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 OR14L1PQ8NHC6 308 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 CNTNAP3BQ96NU0 1288 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 OXGR1Q96P68 337 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 COQ7Q99807 217 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 CNTNAP3Q9BZ76 1288 aa12.66□□□□□ -0.38
CUX1-209ENST00000487284 TXNL4BQ9NX01 149 aaKnown RBP12.66□□□□□ -0.38
CUX1-209ENST00000487284 SIRT4Q9Y6E7 314 aaPredicted RBP12.66□□□□□ -0.38
CUX1-209ENST00000487284 DNAJC13O75165 2243 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TRDV1A0A1B0GX56 115 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 METTL15A6NJ78 407 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 GJE1A6NN92 205 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 E9PI62 339 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 J3QLW9 94 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 LRRTM2O43300 516 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 DNPH1O43598 174 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TRAF3IP2O43734 574 aaPredicted RBP12.65□□□□□ -0.38
CUX1-209ENST00000487284 HPNP05981 417 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 INHBBP09529 407 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 GAAP10253 952 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 CTLA4P16410 223 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 ZNF19P17023 458 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 GALP22466 123 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 CRABP1P29762 137 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 FABP5Q01469 135 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 MOGQ16653 247 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TP53I3Q53FA7 332 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 ZNF684Q5T5D7 378 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 EGFL6Q8IUX8 553 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 WDFY1Q8IWB7 410 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TMEM203Q969S6 136 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 PELI1Q96FA3 418 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TXNDC15Q96J42 360 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 KLHL15Q96M94 604 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TAAR6Q96RI8 345 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 INTS14Q96SY0 518 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 TM9SF2Q99805 663 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 MED29Q9NX70 200 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 A3GALT2U3KPV4 340 aa12.65□□□□□ -0.38
CUX1-209ENST00000487284 PHF3Q92576 2039 aaKnown RBP12.65□□□□□ -0.39
CUX1-209ENST00000487284 TVP23AA6NH52 213 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 PLPP2O43688 288 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 SLC16A7O60669 478 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 EIF1BO60739 113 aaKnown RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 HLA-DPB1P04440 258 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 ZNF24P17028 368 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 BIDP55957 195 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 CSNK2A1P68400 391 aaPredicted RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 DYNC1I2Q13409 638 aaKnown RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 DMKNQ6E0U4 476 aaPredicted RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 DNM1P34Q6PK57 102 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 HDDC2Q7Z4H3 204 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 FAM109AQ8N4B1 249 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 SNX33Q8WV41 574 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 MRPL13Q9BYD1 178 aaKnown RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 TTTY10Q9BZA0 68 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 NXF2Q9GZY0 626 aaKnown RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 SLC6A15Q9H2J7 730 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 RERGLQ9H628 205 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 WDR76Q9H967 626 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 QPCTLQ9NXS2 382 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 ST6GALNAC2Q9UJ37 374 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 RASD1Q9Y272 281 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 KLHDC2Q9Y2U9 406 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 SPTA1P02549 2419 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 A0A0J9YW62 118 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 PRR32B1ATL7 298 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 CENPBD1B2RD01 187 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 OGG1O15527 345 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 RAMP1O60894 148 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 ALOX5APP20292 161 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 PTGS2P35354 604 aa12.64□□□□□ -0.39
CUX1-209ENST00000487284 GBX2P52951 348 aaPredicted RBP12.64□□□□□ -0.39
CUX1-209ENST00000487284 TRAM1Q15629 374 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms