RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 COL11A1P12107 1806 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 C17orf113A0A1B0GUU1 675 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 HIDE1A8MVS5 230 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 H7C1Q1 480 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 TRIM77I1YAP6 450 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 PMS2P2O95744 297 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 GPANK1O95872 356 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 WDPCPO95876 746 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 CXCL2P19875 107 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 C2orf76Q3KRA6 126 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 OVCH1Q7RTY7 1134 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 SERINC2Q96SA4 455 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ZFP64Q9NPA5 681 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 PURGQ9UJV8 347 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 KCND3Q9UK17 655 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 SDCBPO00560 298 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 AK1P00568 194 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 CNR1P21554 472 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 CCNOP22674 350 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 KCNJ3P48549 501 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 SLC26A5P58743 744 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 RPS21P63220 83 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 ABHD12BQ7Z5M8 362 aaPredicted RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 OR4K15Q8NH41 348 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 ZC3HAV1LQ96H79 300 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 GPR137Q96N19 417 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 URM1Q9BTM9 101 aaKnown RBP12.37□□□□□ -0.43
USP42-206ENST00000479544 ADAM29Q9UKF5 820 aa12.37□□□□□ -0.43
USP42-206ENST00000479544 TRPM6Q9BX84 2022 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 P2RY10O00398 339 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 NQO2P16083 231 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 CEBPBP17676 345 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 GNRHRP30968 328 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 ADIPOR2Q86V24 386 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 FRMD1Q8N878 549 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 MORN4Q8NDC4 146 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 PTP4A1Q93096 173 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 NXF5Q9H1B4 397 aaKnown RBP12.36□□□□□ -0.43
USP42-206ENST00000479544 SLC6A17Q9H1V8 727 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 KLRF1Q9NZS2 232 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 APOBEC3BQ9UH17 382 aaKnown RBP12.36□□□□□ -0.43
USP42-206ENST00000479544 CYP8B1Q9UNU6 501 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 UTRNP46939 3433 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 THEGLP0DJG4 465 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 TMIGD3P0DMS9 266 aaPredicted RBP12.36□□□□□ -0.43
USP42-206ENST00000479544 S100PP25815 95 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 SERPINF1P36955 418 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 ZNF770Q6IQ21 691 aaPredicted RBP12.36□□□□□ -0.43
USP42-206ENST00000479544 OR2W3Q7Z3T1 314 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 STPG2Q8N412 459 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 OR51T1Q8NGJ9 327 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 HSD17B8Q92506 261 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 EHFQ9NZC4 300 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 FBXO7Q9Y3I1 522 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 SDK2Q58EX2 2172 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 GABRA1P14867 456 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 PLCXD2Q0VAA5 305 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 MANEAQ5SRI9 462 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 OR52W1Q6IF63 320 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 BVESQ8NE79 360 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 BANF2Q9H503 90 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 OR5V1Q9UGF6 321 aa12.36□□□□□ -0.43
USP42-206ENST00000479544 MEGF11A6BM72 1044 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 C2orf74A8MZ97 194 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 NME2P1O60361 137 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 IFNA17P01571 189 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 NMBP08949 121 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 RAB30Q15771 203 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 SLC39A5Q6ZMH5 540 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 USP53Q70EK8 1073 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 OR1M1Q8NGA1 313 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 OR4N2Q8NGD1 307 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 OR4D6Q8NGJ1 314 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 TTC9Q92623 222 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 MRI1Q9BV20 369 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 CHST6Q9GZX3 395 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 IGLV3-16A0A075B6K0 115 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 F5H5K5 113 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 FGF17O60258 216 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 TMEM225BP0DP42 221 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 NME1P15531 152 aaKnown RBP12.35□□□□□ -0.43
USP42-206ENST00000479544 CTRB1P17538 263 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 HERV-K104P61576 105 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 ZNF273Q14593 569 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 GNMTQ14749 295 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 BATFQ16520 125 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 SLC36A2Q495M3 483 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 CTRB2Q6GPI1 263 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 PAPD4Q6PIY7 484 aaKnown RBP12.35□□□□□ -0.43
USP42-206ENST00000479544 MAMDC2Q7Z304 686 aaPredicted RBP12.35□□□□□ -0.43
USP42-206ENST00000479544 FNDC9Q8TBE3 224 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 PATE1Q8WXA2 126 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 FGGYQ96C11 551 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 SLC5A7Q9GZV3 580 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 CPNE7Q9UBL6 633 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 ICKQ9UPZ9 632 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 K7EPK0 472 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 PLPP2O43688 288 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 CTGFP29279 349 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms