RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 C9JQL5 133 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 SOX1O00570 391 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 EIF1BO60739 113 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 RNGTTO60942 597 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 PMS2P2O95744 297 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 MUC1P15941 1255 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 PBX2P40425 430 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 EIF1P41567 113 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 PSMD4P55036 377 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ARHGAP19Q14CB8 494 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 C9orf152Q5JTZ5 239 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 BPIFB2Q8N4F0 458 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TSEN15Q8WW01 171 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF514Q96K75 400 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 CST11Q9H112 138 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 WDR76Q9H967 626 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ACKR4Q9NPB9 350 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 MBNL1Q9NR56 388 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 RXFP3Q9NSD7 469 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 SLC22A13Q9Y226 551 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 HEATR5AQ86XA9 2040 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 COLCA2A8K830 154 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 PRRT4C9JH25 899 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR2F2O95006 317 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 S100A9P06702 114 aaKnown RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 EPCAMP16422 314 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 CSRP1P21291 193 aaKnown RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 SDHAP31040 664 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 RORAP35398 523 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 PRKXP51817 358 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 F2RL1P55085 397 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 FABP9Q0Z7S8 132 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR2F1Q13607 317 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 RUNX2Q13950 521 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 NKAPLQ5M9Q1 402 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 LINC01590Q5TEZ4 76 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 FCRL6Q6DN72 434 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR52W1Q6IF63 320 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 SLC39A5Q6ZMH5 540 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 DNM1P46Q6ZS02 220 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 ANKRD33Q7Z3H0 272 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 ETFBKMTQ8IXQ9 262 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 GATSQ8NAP1 163 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR2L3Q8NG85 312 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR5T3Q8NGG3 340 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR1J4Q8NGS1 313 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR13C8Q8NGS7 320 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 DCUN1D4Q92564 292 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 SEH1LQ96EE3 360 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 RRNAD1Q96FB5 475 aaKnown RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 MSRAQ9UJ68 235 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 SERTAD3Q9UJW9 196 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 PCOLCE2Q9UKZ9 415 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 ATG2BQ96BY7 2078 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 A0A1B0GTI1 187 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 C5orf51A6NDU8 294 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 TMEM235A6NFC5 223 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 SNAPINO95295 136 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 CD8AP01732 235 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 AKR1C4P17516 323 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 MNDAP41218 407 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 RAB28P51157 221 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 PEA15Q15121 130 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 DPY19L4Q7Z388 723 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 C10orf53Q8N6V4 93 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 GVQW1Q8N7I0 195 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 INO80EQ8NBZ0 244 aaPredicted RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 ADAD2Q8NCV1 583 aaKnown RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 OR6N2Q8NGY6 317 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 TCEAL3Q969E4 200 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 FAM3DQ96BQ1 224 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 CMBLQ96DG6 245 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 C20orf24Q9BUV8 137 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 PCBD2Q9H0N5 130 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 SEMA6CQ9H3T2 930 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 PRMT8Q9NR22 394 aaPredicted RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 DPP7Q9UHL4 492 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 MRPS2Q9Y399 296 aaKnown RBP10.62□□□□□ -0.71
CPSF3-202ENST00000460593 ENTPD2Q9Y5L3 495 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 CSAG2Q9Y5P2 127 aa10.62□□□□□ -0.71
CPSF3-202ENST00000460593 POM121BA6NF01 834 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 MSGN1A6NI15 193 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 PQBP1O60828 265 aaKnown RBP10.61□□□□□ -0.71
CPSF3-202ENST00000460593 LY86O95711 162 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 PLGP00747 810 aaPredicted RBP10.61□□□□□ -0.71
CPSF3-202ENST00000460593 IFNA4P05014 189 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 S100A6P06703 90 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF44P15621 663 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 ABOP16442 354 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 CD1CP29017 333 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 NR0B1P51843 470 aaKnown RBP10.61□□□□□ -0.71
CPSF3-202ENST00000460593 CDK3Q00526 305 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 C5orf46Q6UWT4 87 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 SLC35D2Q76EJ3 337 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 FAM220AQ7Z4H9 259 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 VN1R4Q7Z5H5 301 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 PRSS35Q8N3Z0 413 aa10.61□□□□□ -0.71
CPSF3-202ENST00000460593 ELF4Q99607 663 aaPredicted RBP10.61□□□□□ -0.71
CPSF3-202ENST00000460593 WDR77Q9BQA1 342 aaPredicted RBP10.61□□□□□ -0.71
CPSF3-202ENST00000460593 PITHD1Q9GZP4 211 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms